Index

A

aboveControlStruct (Java field) absLinearForm (Java field) absorb(NewSymbolHolder) (Java method) absorb(Unit) (Java method) absorbAndDeleteAfterCreateNewUnit() (Java method) absorbAndDeleteUnit(Unit) (Java method) accept(File) (Java method) accessIndexes (Java field) accessInfo (Java field) accessTree (Java field), [1] accessTreePrint(int) (Java method) accessType (Java field) accumulateSymbolDecl(SymbolDecl, SymbolTable) (Java method) accumulateTargetForSymbolDecl(SymbolDecl, SymbolTable) (Java method) accumulateValuesFromDownstream() (Java method) accumulateValuesFromUpstream() (Java method), [1], [2] accumulateZones(TapList) (Java method) accuracy() (Java method) action (Java field) actionPerformed(ActionEvent) (Java method) activateArrayAccessOrCall(boolean) (Java method) active() (Java method) activeCalledNames (Java field) activeMark() (Java method) activeRootCalledFromContext (Java field) activeTypeDecl(SymbolTable, WrapperTypeSpec, String, int) (Java method) activities() (Java method) activityInfo (Java field) ActivityPattern (Java class) ActivityPattern(Unit, boolean, boolean, int) (Java constructor) ActivityPattern(Unit, BoolVector, BoolVector, boolean, int) (Java constructor) activityPatterns (Java field) actuallyDifferentiableZones(TapIntList) (Java method) ACTUALTYPE (Java field) ADActivityAnalyzer (Java class) adActivityAnalyzer (Java field) adActivityAnalyzer() (Java method) ADActivityAnalyzer(CallGraph, TapList, int) (Java constructor) add(Block, int, int) (Java method) addAddressOf(Tree) (Java method) addAddressOfAtBase(Tree) (Java method) addAll(TapList, TapList) (Java method) addAllocatableDeclaration(Tree, Instruction) (Java method) addAllocationPoint(Tree, Tree, TypeSpec, SymbolTable) (Java method) addArgRank(TapList, int) (Java method) addBackFlow(FGArrow) (Java method) addBindCDecl(SymbolTable, Tree) (Java method) addBindFortranCDiffUnit(Unit) (Java method) addBindFortranCFunction(String, String, FunctionDecl) (Java method) addBindFortranCType(TypeDecl, TypeDecl) (Java method) addBlock(Block) (Java method) addCallArrow(Unit, int, Unit) (Java method) addChild(InheritanceTree, boolean) (Java method) addChild(Tree, int) (Java method), [1] addChildren(TapList, int) (Java method), [1] addChildren(Tree[], int) (Java method), [1] addChildrenClass(Unit) (Java method) addCommonEquiv(Tree, SymbolTable, Instruction) (Java method) addCommonInterval(String, int, int, boolean, WrapperTypeSpec) (Java method) addConstDeclaration(Tree, Instruction) (Java method) addControlStruct(ControlStruct, FGArrow) (Java method), [1], [2], [3], [4], [5], [6], [7], [8] addControlStructAtTail(ControlStruct) (Java method) addData(Instruction) (Java method) addDataDepNode(NewBlockGraphNode, boolean, boolean, boolean, boolean, TapList, TapList, TapList, TapList) (Java method) addDeadTree(Tree) (Java method) addDeclaratorModifiers(Tree, TapList) (Java method) addDeref() (Java method) addDerivedSymbolTable(SymbolTable) (Java method) addDiffTypeSpec(SymbolTable, SymbolTable) (Java method), [1], [2], [3] addEdge(int, int, Edge, int, int) (Java method) addEndVar(VariableDecl) (Java method) addExpressionsNumConstants(Tree, Tree) (Java method) addExtension(String) (Java method) addExternalOrForwardDeclaration(Tree, Instruction, boolean) (Java method) addExtraInfo(TapList) (Java method) addFlow(FGArrow) (Java method) addFormatTree(Tree) (Java method) addFuturePlainNodeBwd(Tree, InstructionMask, boolean, TapList, TapList, TapList, TapList, boolean, boolean, String, boolean) (Java method) addFuturePlainNodeFwd(Tree, InstructionMask, boolean, TapList, TapList, TapList, TapList, boolean, boolean, String, boolean) (Java method) addFutureSetDiffNodeBwd(DiffAssignmentNode, String) (Java method) addHeader(Tree, int, String) (Java method) adDiffMode (Java field) addImplicit(Tree, SymbolTable) (Java method) addInfosInList(TapList, TapList, SymbolDecl) (Java method) addInHiddenDiffInitVariables(ZoneInfo) (Java method) addInHiddenInstrumentedVariables(ZoneInfo) (Java method) addInHiddenPushPopVariables(ZoneInfo) (Java method) addInIncludeFileList(String) (Java method) addInInterfaceDecl(FunctionDecl, Unit) (Java method) addInInterfaceDecl(Tree) (Java method) addInstrDeclTl(TapList) (Java method) addInstrDeclTlBeforeUse(Instruction, TapList, TapList, SymbolTable, boolean) (Java method) addInstrHd(Instruction) (Java method) addInstrHd(Tree) (Java method) addInstrHdAfterDecls(Instruction) (Java method) addInstrHdAfterDecls(Tree) (Java method) addInstrHdIfNotPresent(Instruction) (Java method) addInstrTl(Instruction) (Java method) addInstrTl(Tree) (Java method) addInstructionAt(Tree, int) (Java method) addInterfaceDecl(Tree, Unit) (Java method) addInterfaceDecl(TreeProtocol, CallGraph, SymbolTable) (Java method) addIntoLeaves(TapList, TapIntList) (Java method) addIntoSorted(TapIntList, int) (Java method) addIntrinsicDeclaration(Tree, Instruction) (Java method) addIntrinsicUnit(Unit) (Java method) addInTypeDeclNames(Unit, String) (Java method) addInUseNewSymbolHolder(NewSymbolHolder) (Java method) addKind(int) (Java method) addLast(TapList, T) (Java method) addListTreeInList(TapList, TapList) (Java method) addLostComment(Tree) (Java method) addLowerLevelUnit(Unit) (Java method) addMessageAnnotation(Tree, String) (Java method) addMixedLanguageInfos(MixedLanguageInfos) (Java method) addNameList(Instruction) (Java method) addNameSpaceDecl(String, SymbolTable) (Java method) addNewFunctionDecl(FunctionDecl, SymbolTable) (Java method) addNewSymbolDecl(SymbolDecl) (Java method) addNewSymbolHolder(NewSymbolHolder) (Java method) addNode(Node, double, double) (Java method) addNonFlowInstruction(Instruction) (Java method) addNumericalStrings(String, boolean, String, boolean) (Java method) addOffset(TapIntList, int) (Java method) addOneDimension(ArrayDim) (Java method), [1], [2], [3] addOptionsString(String) (Java method) addParentClass(Unit, boolean, boolean) (Java method) addPointerAccessAtBase(Tree) (Java method) addPreComments(String) (Java method) addPrimitiveTypes() (Java method) addProtectedExprs(Tree, Tree) (Java method) addPublicPrivateDecl(String, Tree) (Java method) addRefDiffTypeSpec(SymbolTable, SymbolTable) (Java method) addressChain() (Java method) addSave(Instruction) (Java method) addSchedule(Tree, Tree) (Java method) addStartVar(VariableDecl, SymbolTable, Tree) (Java method) addSymbolDecl(SymbolDecl) (Java method) addSymbolDeclStructs(SymbolDecl, TapList, SymbolTable, Block, Tree) (Java method) addSystemSymbolDecl(SymbolDecl) (Java method) addTranslationUnitSymbolTable(SymbolTable) (Java method) addTree(Tree, Tree) (Java method) addTreeDeclTl(TapList, TapList) (Java method) addTreeInList(Tree, TapList) (Java method)

addTypeDeclaration(Tree, Tree, Instruction, TapList) (Java method) addTypeDeclSymbolTable(SymbolTable) (Java method) addTypeModifiers(Tree, TapList) (Java method) addUnlessPresent(TapList, T) (Java method) addUnlessPresentEquals(TapList, T) (Java method) addUseDecl(Tree) (Java method) addUseDecl(Tree, SymbolTable) (Java method) addUseDiffSizesAndUserHelp(Tree, TapList, int) (Java method) addUsedSymbol(SymbolDecl) (Java method) addUsedSymbolsInExpr(Tree, TapList, SymbolTable, TapList, boolean, boolean) (Java method) addUsedSymbolsInType(TapList, SymbolTable) (Java method), [1], [2] addVarDecl(TapList, SymbolDecl) (Java method) addVarDeclaration(Tree, Instruction, boolean, ToBool) (Java method) addVarDimDeclaration(Tree, Instruction) (Java method) addVariableName(String) (Java method) addVarIntoFuturePrivates(NewSymbolHolder, Tree, boolean, boolean) (Java method) addVarIntoFutureSumReductions(NewSymbolHolder, Tree) (Java method) addVarName(TapList, String) (Java method) addWith(WrapperTypeSpec) (Java method), [1] adEnv (Java field), [1] ADJ_DEBUG (Java field) ADJOINT (Java field) ADJOINT_BWD (Java field) ADJOINT_FWD (Java field) ADJOINT_MODE (Java field) ADJOINT_SPLIT_MODE (Java field) adjointDifferentiateAssignedExpression(Tree, boolean, Tree, boolean, TapList, BoolVector, SymbolTable) (Java method) adoptOrAppendComments(Tree, String, Tree) (Java method) adoptZones(VariableDecl) (Java method) ADServlet (Java class) ADTBRAnalyzer (Java class) adTbrAnalyzer (Java field) adTbrAnalyzer() (Java method) adTBRTopDownContext() (Java method) adTBRTopDownContextOnDiffPtr() (Java method) advance() (Java method) AlignmentBoundary (Java class) AlignmentBoundary(int) (Java constructor) AlignmentBoundary(int, boolean, WrapperTypeSpec) (Java constructor) ALL_CASES (Java field) allAnnotations() (Java method) allArrows (Java field) allBlocks (Java field) allBlocks() (Java method), [1] allCallees() (Java method) allCalleesMulti(TapList) (Java method) allCalleesMultiAvoiding(TapList, TapList) (Java method) allCallers() (Java method) allCallersMulti(TapList) (Java method) ALLKIND (Java field) allocateDeclaredZones(int[], boolean) (Java method) allocateGlobals (Java field) allocateOneZone(WrapperTypeSpec, int, Tree, WrapperTypeSpec, TapList, int, boolean, boolean, boolean, boolean, ZoneInfo, ZoneInfo, Unit) (Java method) allocateSideEffectZones() (Java method) allocateTmpZone() (Java method) allocateZones(Tree, TapList, WrapperTypeSpec, WrapperTypeSpec, int, TapList, int, boolean, boolean, boolean, ZoneInfo, TapList, SymbolTable, Unit) (Java method) allocateZones(ZoneAllocator, Unit) (Java method), [1] allocateZonesOfVariables(ZoneAllocator) (Java method) allSingletonLeaves(TapList) (Java method) allSubArrayAccesses (Java field) allSymbolTableRoots() (Java method) allSymbolTableRoots(SymbolTable) (Java method) alreadyDiffInclude(String) (Java method) alreadyPresent(Instruction) (Java method) ALT_DIFF_VAR (Java field) altRootIdent (Java field) AnalyseModePanel (Java class) AnalyseModePanel() (Java constructor) analysisIsOutOfDate (Java field) analysisIsOutOfDateDown (Java field) analysisIsOutOfDateUp (Java field) analyze() (Java method), [1], [2], [3], [4], [5], [6], [7] analyzeBackward(TapList, TapList, TapList) (Java method) analyzeFile() (Java method) analyzeForward(TapList, TapList, TapList) (Java method) analyzeInBottomUp() (Java method), [1] analyzeInstructionDirectives(Instruction, Tree) (Java method) analyzeInTopDown() (Java method), [1] analyzeOMPScopings(Tree, boolean, TapList, TapList, TapList) (Java method) analyzeStatically(TapList) (Java method) analyzeUnitDirectives(Unit, Tree) (Java method) and(BoolVector) (Java method) annotateDiffDeclsAndTypesAndSetOnceActive(SymbolTable, int) (Java method) append(TapIntList, TapIntList) (Java method) append(TapList, TapList) (Java method) appendComments(Tree, TapList, int) (Java method) appendComments(Tree, Tree) (Java method) appendCommentsBlock(Tree, Tree) (Java method) appendCommon(String, VariableDecl, int, SymbolTable) (Java method) appendDiffPattern(DiffPattern) (Java method) appendIfAbsent(int) (Java method) appendPostComments(TapList) (Java method), [1] appendPreComments(TapList) (Java method) argRK (Java field) argsPublicRankTrees (Java field) argumentIsABuffer(int) (Java method) argumentIsAReduceOp(int) (Java method) argumentIsAType(int) (Java method) argumentIsRead(int) (Java method) arguments (Java field) argumentsTypes (Java field) argumentsTypesSpec() (Java method) arity (Java field) ArrayDim (Java class) ArrayDim(Tree, Integer, Integer, Tree, int, int, int) (Java constructor) arrayDimMin (Java field) ArrayDimPlusIter (Java class) ArrayDimPlusIter(ArrayDim, IterDescriptor) (Java constructor) arrayTripletsInside(Tree) (Java method) ARRAYTYPE (Java field) ArrayTypeSpec (Java class) ArrayTypeSpec(WrapperTypeSpec, ArrayDim[]) (Java constructor) arrayTypeToArrayDeclarator(Tree) (Java method) ASS_GOTO (Java field) assignedLabel(Tree) (Java method) assignedLabelVar(Tree) (Java method) assignedName(Tree) (Java method) assignedRef (Java field) assocAddressDiffSuffix (Java field) assocAddressDiffSuffix() (Java method) assocAddressDiffTypesUnit(int) (Java method) assocAddressDiffTypesUnits (Java field) assocAddressValueSuffix (Java field) assocAddressValueSuffix() (Java method) associationByAddress (Java field) associationByAddress() (Java method) associationByAddressTypes (Java field) assq(int, TapList) (Java method) assq(KEYTYPE, TapList) (Java method) assqOne(int, TapList) (Java method) assqString(String, TapList) (Java method) assqStringInTriplet(String, TapList) (Java method) assqTree(Tree, TapList) (Java method) atEnd() (Java method) ATOM_INT_ARITY (Java field) ATOM_STRING_ARITY (Java field) AtomFuncDerivative (Java class) AtomFuncDerivative(Tree, TapList, Tree, TapList, TapPair[], Tree[], TapList[]) (Java constructor) attachComments(Instruction, Tree, TapPair, TapPair) (Java method) attachCommentsToTree() (Java method) attachToUpperUnit(Unit, Unit) (Java method) avlXEffectsAdded() (Java method) avlXEffectsVisible() (Java method) avlXs() (Java method)

B

B_SET_ALL (Java field) B_SET_ONE (Java field) B_SET_SIZE (Java field) B_SET_ZERO (Java field) backAssociations (Java field) backFlow (Java field) backFlow() (Java method), [1] baseName(Tree) (Java method) baseTree(Tree) (Java method) baseTypeName() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14] baseTypeSpec(boolean) (Java method), [1], [2], [3], [4], [5], [6] baseTypeTree(Tree) (Java method) BasicBlock (Java class) BasicBlock(SymbolTable, TapList, TapList) (Java constructor) basisNotImportedSymbolTable() (Java method) basisSymbolTable() (Java method) bestVarName() (Java method) bg (Java field) bindFortranCFunctions() (Java method) bindFortranCType() (Java method) bindVariableAndCommon(String, VariableDecl, Unit) (Java method) BINOMIAL_LOOP (Java field) BINOMIALCKP (Java field) bitfieldTree() (Java method) Block (Java class) block (Java field) block() (Java method) Block(SymbolTable, TapList, TapList) (Java constructor) blockActivities (Java field) blockAvlXs (Java field) BlockDifferentiator (Java class) blockDifferentiator (Java field) BlockDifferentiator(DifferentiationEnv) (Java constructor) BlockNode (Java class) BlockNode(Block, ByteArrayOutputStream, boolean) (Java constructor) blockRecomputations (Java field) blockReqXs (Java field) blocksFromBitVector(BoolVector) (Java method) BlockStorage (Java class) BlockStorage(Unit) (Java constructor) blockTBRs (Java field) blockUsefulnesses (Java field) body (Java field), [1] bodySymbolTable() (Java method) BoolMatrix (Java class) BoolMatrix(boolean, int, int) (Java constructor) BoolMatrix(int, int) (Java constructor) BoolVector (Java class) BoolVector(boolean, int) (Java constructor) BoolVector(int) (Java constructor) bootstrapCss (Java field) bSets (Java field) build(int) (Java method) build(int, int) (Java method) build(int, String) (Java method) build(int, TapList) (Java method) build(int, Tree) (Java method) build(int, Tree, Tree) (Java method) build(int, Tree, Tree, Tree) (Java method) build(int, Tree, Tree, Tree, Tree) (Java method) build(int, Tree, Tree, Tree, Tree, Tree) (Java method) build(int, Tree, Tree, Tree, Tree, Tree, Tree) (Java method) build(int, Tree, Tree, Tree, Tree, Tree, Tree, Tree) (Java method) build(int, Tree, Tree, Tree, Tree, Tree, Tree, Tree, Tree) (Java method)

build(int, Tree[]) (Java method) build(Tree, SymbolTable, Instruction, TapList, TapList, TapList, ToBool, WrapperTypeSpec) (Java method) build(TreeProtocol, SymbolTable, CallGraph, int, Unit, boolean) (Java method) build(WrapperTypeSpec, TapList, boolean, Tree, int, SymbolTable, Instruction, TapList) (Java method) buildAAInstructionVORD(Tree, SymbolTable, Tree, String) (Java method) buildAccessInfo() (Java method) buildAllocate(Tree, int, SymbolTable, Instruction) (Java method) buildArrayDeclarator(int, Tree, Tree) (Java method) buildArrayTripletAccess(Tree, Tree, Tree, int) (Java method) buildCall(Tree, Tree) (Java method) buildCall(Tree, Tree, Tree) (Java method) buildCLoc(Tree, String) (Java method) buildConstantOne() (Java method), [1], [2], [3], [4] buildConstantZero() (Java method), [1], [2], [3], [4], [5] buildCptrTree(Tree, SymbolTable, boolean, String, Unit, WrapperTypeSpec, boolean) (Java method) buildDeallocate(Tree) (Java method) buildDefaultIntrinsicCallActivity(Unit, int) (Java method) buildDefaultIntrinsicDependencies(Unit) (Java method) buildDiffInstructions(Tree, Tree, int, Unit, ActivityPattern, boolean, boolean, boolean, boolean, boolean, SymbolTable, SymbolTable, BoolVector, BoolVector, BoolVector, BoolVector, BoolVector, BoolVector, BoolVector) (Java method) buildDiffInstructionsOfAssignAllocate(Tree, int, SymbolTable, SymbolTable, BoolVector, BoolVector, BoolVector, BoolVector) (Java method) buildDiffInstructionsOfDeallocate(Tree, int, boolean, SymbolTable, SymbolTable, BoolVector, BoolVector, BoolVector, BoolVector, BoolVector, BoolVector) (Java method) buildDiffInstructionsOfMPICall(Tree, Tree, int, Unit, ActivityPattern, MPIcallInfo, boolean, SymbolTable, SymbolTable, BoolVector, BoolVector, BoolVector, BoolVector) (Java method) buildDiffPreInitsForTangent(Tree, Tree, Tree, BoolVector, BoolVector, BoolVector, BoolVector) (Java method) buildDimColon(int, Tree) (Java method) buildDirNumberReference(SymbolTable) (Java method) buildDoHeaderTree(SymbolTable, Unit, boolean) (Java method) buildExplicitIdentityDestsRow(int, SymbolTable) (Java method) buildExpressionOpposite(Tree) (Java method) buildExternalContext(Unit) (Java method) buildExternalUnit(String, boolean) (Java method) buildIndexTree(SymbolTable, Unit) (Java method) buildInfoBoolTreeOfDeclaredZones(TapList, BoolVector, int[], TapIntList, int, SymbolTable) (Java method) buildInfoBoolTreeOfDeclaredZonesAll(TapList, BoolVector, int[], TapIntList, int, SymbolTable) (Java method) buildInfoBoolTreeOfPointers(TapList, int[], SymbolTable) (Java method) buildInfoPRZVTreeOfExtendedDeclared(TapList, BoolMatrix, int, int[]) (Java method) buildInitAssign(Tree) (Java method) buildInstruction(SymbolTable, SymbolTable, DifferentiationEnv, Unit) (Java method) buildInstructions(SymbolTable, SymbolTable, DifferentiationEnv, Unit) (Java method) buildIOCall(Tree) (Java method) buildIterativeLength(Tree, SymbolTable) (Java method) buildListIdents(TapList) (Java method) buildNameInIdent(Tree) (Java method) buildNameInText(Tree) (Java method) buildNumericalOpposite(Tree) (Java method) buildPartialDerivative(int) (Java method) buildPow(Tree) (Java method) buildPublicPointerZoneMask(Unit) (Java method) buildRealConstantZero() (Java method) buildReturnTypeTree(Block, TapList, ToObject, TapList) (Java method) buildSideEffectMemoryMap() (Java method) buildSingleStatement(TapList) (Java method) buildSizeArgument1(Tree, SymbolTable) (Java method) buildSizeTree(Tree, Tree, Tree) (Java method) buildSmartAddSub(Tree, int, Tree) (Java method) buildSmartMulDiv(Tree, int, Tree) (Java method) buildSortedUnitsList(int, int, int) (Java method) buildTypeName(Tree) (Java method) buildTypeNameForProcName(TapList, SymbolTable) (Java method) buildTypeSpecFromArgs(SymbolTable, Instruction, TapList, Tree[], ToBool) (Java method) buildVarDeclaration(SymbolTable) (Java method) buildZoneVisibleAccessTree(ZoneInfo) (Java method) bullet() (Java method) butRemainsInFwdSweep() (Java method) BYTE_SIZE (Java field) byteSize (Java field)

C

C (Java field) C_FAMILY (Java field) CALL (Java field) callActivity() (Java method) CallArrow (Java class) CallArrow(Unit, Unit) (Java constructor) callees (Java field) callees() (Java method) callers (Java field) callers() (Java method) callersOfRootUnits (Java field) callersThatCall() (Java method) callerUnitNamesThatCall() (Java method) CallGraph (Java class) callGraph() (Java method) CallGraph(String) (Java constructor) CallGraphDifferentiator (Java class) callGraphDifferentiator (Java field) CallGraphDifferentiator(DifferentiationEnv) (Java constructor) CallGraphDisplayer (Java class) CallGraphDisplayer(CallGraph, String, boolean, String, String, String, String, String) (Java constructor) CallGraphPrinter (Java class) CallGraphPrinter(String) (Java constructor) callingInstruction (Java field) callingPatterns() (Java method) CALLS (Java field) callUsefulness() (Java method) canCompare(WrapperTypeSpec, WrapperTypeSpec) (Java method) canMatchPointerTo(WrapperTypeSpec) (Java method) canReceiveVectorialDim(WrapperTypeSpec, boolean) (Java method) carry (Java field) CASE (Java field) cases (Java field) casN() (Java method) cassq(int, TapList) (Java method) cassq(KEYTYPE, TapList) (Java method) cassqString(String, TapList) (Java method) CDecompiler (Java class) CDecompiler(Printer, String) (Java constructor) center(Window) (Java method) changeCommonDeclared(int[], int) (Java method) changeKind(BoolVector, int[], int, int[], int, SymbolTable) (Java method) changeMode(boolean) (Java method) CHAR_SIZE (Java field) charSize (Java field) checkActivitySwitches(Block, Block, SymbolTable, TapList, TapList) (Java method) checkAndUpdateTapEnvInclude(Tree) (Java method) checkArray() (Java method) checkArrayAccessOrCall(SymbolTable, Tree) (Java method) checkBindFortranCType(WrapperTypeSpec, WrapperTypeSpec) (Java method) checkBoolean() (Java method) checkDiffTypeSpec(SymbolTable, SymbolTable, int, String, boolean, boolean, ArrayDim, ArrayDim, String, String, Tree, Tree) (Java method) checkDimensions(Tree, SymbolTable) (Java method) checkFormatLabel(String, Tree) (Java method) checkFunctionName(FunctionDecl, SymbolTable) (Java method) checkLabels(Tree, TapList, TapList, TapList) (Java method) checkMessagePassingCalls(CallGraph) (Java method), [1] checkNamedFieldType(Tree, SymbolTable, WrapperTypeSpec) (Java method) checkNoneDimensions(ArrayDim[], boolean, boolean, ArrayDim, String, String, Tree, Tree, SymbolTable, NewSymbolHolder) (Java method) checkNoneDimensionsOfNewSH(String, String, Tree, SymbolTable, NewSymbolHolder) (Java method) checkNumberOfChannels(CallGraph) (Java method) checkNumeric() (Java method) checkNumericInt() (Java method) CHECKPOINT (Java field) CHECKPOINTEND (Java field) checkPointer() (Java method) CHECKPOINTSTART (Java field) checkRecord() (Java method) checkStatementFunctionCall(Tree) (Java method) checkStatementFunctionDecl(SymbolTable, Tree) (Java method) checkSyntax(Phylum, String) (Java method), [1], [2] checkSyntax(String) (Java method) checkTypeSpecValidity() (Java method) checkTypeSpecValidity(TapList) (Java method), [1], [2], [3], [4], [5], [6] checkUnusedDeclaration(Unit) (Java method) children (Java field) children() (Java method), [1], [2], [3], [4] childrenClasses (Java field) childrenList() (Java method), [1], [2] childrenPhyla (Java field) Chrono (Java class) Chrono() (Java constructor) cite() (Java method), [1], [2], [3], [4], [5], [6] citeFlowShort() (Java method) CLASS (Java field) ClassDecl (Java class) ClassDecl(String, Unit) (Java constructor) className (Java field) CLASSTYPE (Java field) ClassTypeSpec (Java class) classTypeSpec() (Java method) ClassTypeSpec(Unit) (Java constructor) cleanBeforeGenerate(CallGraph) (Java method) cleanBoolCopy(Tree, Unit) (Java method) cleanCopySymbolDecls() (Java method) cleanExtraInfoValue(TapList, String) (Java method) cleanJsonFiles(TapList) (Java method) cleanSubDirectory(String, HttpSession, String) (Java method) cloneAsUndefinedNumeric(boolean) (Java method), [1], [2], [3] closeFile() (Java method), [1] closeGroup() (Java method) closeList() (Java method) closeOutputStream() (Java method) CLOSEPARENTH (Java field) code (Java field) coherence() (Java method), [1], [2] collectAddressTakenZones(Tree, Instruction, TapList) (Java method) collectCommentStrings(TapList) (Java method) collectCommentStrings(Tree) (Java method) collectContainedUnits(TapList) (Java method) collectDiffSubUnits(Unit, int, TapList, TapList) (Java method) collectTrees(TapList) (Java method) collectTrueTrees(BoolVector, int[], SymbolTable) (Java method) collectUnits(TapList) (Java method) collectUsedTrees(TapList, TapList) (Java method), [1], [2], [3], [4], [5], [6], [7] COLON (Java field) combineArrayWith(TypeSpec) (Java method) combineDeclMessagesSwitch (Java field) combineNumeric(TypeSpec, TypeSpec, Tree) (Java method) combineWith(TypeSpec, SymbolTable) (Java method) combineWith(WrapperTypeSpec, SymbolTable) (Java method) comesFromAllocate() (Java method) COMMA (Java field) commandWarning(int, String) (Java method) commentChar (Java field) commentStart(int) (Java method) commentsToListReversed(Tree) (Java method) COMMON (Java field), [1] commonActivityMemoryMap (Java field) commonEquivsIntoMemoryMap() (Java method) commonInstructions (Java field) commonName (Java field), [1] commonNDZofFrontierArrows(TapList, int) (Java method) commonNDZofFrontierDestinations(TapList, int) (Java method) commonNDZofFrontierOrigins(TapList, int) (Java method) commonSymbolTable() (Java method) commonVariableDecl() (Java method) COMP_GOTO (Java field) compare_debug_indent (Java field) compareChannelZoneDataDownstream(int, Block) (Java method), [1], [2], [3], [4], [5], [6] compareChannelZoneDataUpstream(int, Block) (Java method), [1], [2], [3], [4], [5] compareDownstreamValues() (Java method), [1], [2], [3], [4], [5], [6], [7] compareModifiersWith(int, Tree, int, Tree, int) (Java method) comparesWith(TypeSpec, int, TypeSpec, TypeSpec, TapList) (Java method) compareUpstreamChannelValuesWithInitial(TapList) (Java method), [1] compareUpstreamValues() (Java method), [1], [2], [3], [4], [5], [6], [7] compareWithStorage(BoolVector, BoolVector, BoolVector, BoolVector, int, int, BlockStorage, BlockStorage) (Java method) compareWithStorage(BoolVector, BoolVector, int, BlockStorage, BlockStorage) (Java method) completeType (Java field) COMPOSITETYPE (Java field) CompositeTypeSpec (Java class) CompositeTypeSpec(String, FieldDecl[], int, Tree, Unit) (Java constructor) computeAllDominatorlikeInfo() (Java method) computeArrowZoneInterfaces() (Java method) computeCallTranslatorElem(ZoneInfo, Unit, Unit) (Java method) computeDominatorArrows() (Java method) computeFirstDeclaredZone(int[], SymbolTable) (Java method) computeIntConstant(Tree) (Java method) computeSave(SymbolTable, Instruction) (Java method) computeSaveVarDecl(SymbolTable, VariableDecl) (Java method) computeSaveVarDecls(SymbolTable, TapList) (Java method) computeSize() (Java method), [1], [2], [3], [4], [5], [6], [7] computeTestZones() (Java method) computeTranslator() (Java method) computeZoneInterfaces() (Java method) computeZonesUsedInDeclarations() (Java method) concat(FGThreads) (Java method) concatWithNull(Tree) (Java method) condense(Unit) (Java method) condenseFG(boolean) (Java method) conformingTypeSpec(WrapperTypeSpec, WrapperTypeSpec) (Java method) connectNewChild(Tree, Tree[], int) (Java method) conservativeValue (Java field) CONSTANT (Java field), [1], [2]

constantValue (Java field) constantZones (Java field) constantZones() (Java method) containDirectives(TapList) (Java method) containDirectives(Tree) (Java method) containerFileName (Java field) containerUnit (Java field) CONTAINS (Java field) contains(BoolVector, int) (Java method) contains(TapIntList) (Java method) contains(TapIntList, int) (Java method) contains(TapIntList, TapIntList) (Java method) contains(TapList, T) (Java method) contains(Tree, int, String) (Java method) contains(Tree, String, boolean) (Java method) containsAPointer() (Java method), [1], [2], [3], [4], [5] containsArray() (Java method) containsArrayDeclarator(SymbolDecl, Tree) (Java method) containsArrayTriplet(Tree) (Java method) containsCase(int) (Java method) containsEquals(TapList, T) (Java method) containsEqualsObjectPair(TapList, Unit, String) (Java method) containsExtendedDeclared(BoolVector, int[], int, TapIntList, TapIntList, SymbolTable, Unit) (Java method) containsFunctionDeclarator(Tree, String) (Java method) containsMetaType(TapList) (Java method), [1], [2], [3], [4], [5], [6], [7] containsModifier(String, Tree, boolean) (Java method) containsObjectPair(TapList, T, U) (Java method) containsOffset(int) (Java method) containsOneOfStrings(TapList, String[], boolean) (Java method) containsPreComment(String) (Java method) containsSameNameSymbolDecl(TapList, SymbolDecl) (Java method) containsStartVars(TapList, TapTriplet) (Java method) containsString(TapList, String, boolean) (Java method) containsTree(TapList, Tree) (Java method) containsTreeEquals(TapList, Tree) (Java method) containsUndefinedType() (Java method), [1], [2] containsUnknownDimension() (Java method), [1], [2], [3], [4], [5] containsUnknownDimension(Tree) (Java method) containsVariableDecl(TapList, VariableDecl) (Java method) contents (Java field) Context (Java class) contextMinus(int, int) (Java method) contextPlus(int, int) (Java method) continuationChar (Java field) controlInstruction (Java field) controllers (Java field) controllersZone (Java field) ControlPanel (Java class) ControlPanel() (Java constructor) ControlStruct (Java class) controlStructBlock (Java field) convergeToBlock(Block, boolean, boolean) (Java method) convergeToInstr(Instruction, TapList, Unit, SymbolTable, TapList, boolean) (Java method) convertPublicInfoFromUnitToUnit(BoolVector, Unit, Unit) (Java method) copiedIncludes (Java field) copiedSonsList(Tree) (Java method) copiedUnit (Java field) copiedUnits (Java field) copiedUnitsBack (Java field) copy() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22] copy(InheritanceTree) (Java method) copy(int, int) (Java method) copy(SymbolDecl) (Java method) copy(TapIntList) (Java method) copy(TapList) (Java method) copy(TapList, UnitStorage) (Java method) copy(Tree) (Java method) COPY_DIFF_VAR (Java field) copyAnnotation(ActivityPattern, Tree, Tree) (Java method), [1] copyAnnotations(Tree) (Java method) copyInstructions(Block, TapList) (Java method) copyIntoWithoutArrows(Block, TapList) (Java method) copyLinksIntoCopy(SymbolDecl, TapList) (Java method) copyListST(UnitCreationContext) (Java method) copyPublicSTDeclarationBlock (Java field) copyReqExplicitInfos(ActivityPattern) (Java method) copyStopOnComposite(Unit) (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14] copySymbolDecl (Java field) copySymbolHolderAnnotation(Tree, Tree, SymbolTable) (Java method) copyTree(TapList) (Java method) copyTreeNoPointed(TapList) (Java method) copyTreePlusComments() (Java method) copyTreeRequiredInDiff(ActivityPattern, Tree, Tree) (Java method) copyUnitBody(Unit, Unit, Instruction) (Java method) copyUnitExceptSymbolTables(CallGraph, Unit, Unit) (Java method) copyWatchingEqualsSubtrees(Tree, TapList) (Java method) copyWatchingSubtrees(Tree, TapList) (Java method) coversFurther (Java field) CPLUSPLUS (Java field) CPLUSPLUS_FAMILY (Java field) CPLUSPLUS_PARSER_NB_ARGS (Java field) cPlusPlusRootSymbolTable() (Java method) cppBeforeParsing (Java field) cppCommand (Java field) cppOptions (Java field) createComponents() (Java method) createDeclaredInfo(TapIntList, TapIntList, TapIntList, TapIntList) (Java method) createDimensions(TapList) (Java method) createElseMask() (Java method) createIdentityInfo(ZoneInfo) (Java method) createNewIntrinsicUnit(String, int) (Java method) createNewUnit(Unit, int) (Java method) createOrGetDiffTypeDeclSymbolHolder(SymbolTable, WrapperTypeSpec, String) (Java method) createParameterInfo(int, ZoneInfo, Unit, Unit) (Java method) createResultInfo(int, ZoneInfo) (Java method) createRootSymbolTables() (Java method) createSideEffectInfo(TapIntList, TapIntList, TapIntList, TapIntList) (Java method) createStub (Java field) createUnitDefinitionStub(Unit, Block) (Java method) createUnitDefinitionStubTree(Unit) (Java method) cRootSymbolTable() (Java method) cssDir() (Java method) CStuff (Java class) CUMUL_AND (Java field) CUMUL_MINUS (Java field) CUMUL_OR (Java field) cumulActiveField(Tree) (Java method) cumulActiveParts(TapList, SymbolTable) (Java method), [1], [2], [3], [4], [5] cumulAnd(BoolVector) (Java method) cumulAnd(BoolVector, int) (Java method) cumulCycleValueWithAdditional(SymbolTable) (Java method), [1], [2], [3], [4], [5], [6] cumulMinus(BoolVector) (Java method) cumulMinus(BoolVector, int) (Java method) cumulOr(BoolMatrix, boolean, int) (Java method) cumulOr(BoolVector) (Java method) cumulOr(BoolVector, int) (Java method) cumulOr(BoolVector, int, int, int) (Java method) cumulOr(TapList, BoolVector, boolean) (Java method) cumulOrGrows(BoolVector) (Java method) cumulOrGrows(BoolVector, int) (Java method) cumulOrTimes(BoolMatrix, BoolMatrix) (Java method) cumulRows(TapIntList, BoolVector) (Java method) cumulValueWithAdditional(SymbolTable) (Java method), [1], [2], [3], [4], [5], [6] cumulWithOper(TapList, Object, int) (Java method) curActivity (Java field) curActivity() (Java method) curAnalysisName (Java field) curArrow (Java field) curBlock (Java field), [1] curBwdSymbolTable (Java field) curCalledUnit (Java field) curCallGraph (Java field) curDiffUnit (Java field) curDiffUnitPushesPointers (Java field) curDiffUnitSort (Java field) curDiffVarSort (Java field) curDiffVectorMap (Java field) curFwdDiffUnit (Java field) curFwdSymbolTable (Java field) curInstruction (Java field) curInstruction() (Java method) curNSEZ (Java field) curOutputStream (Java field) curOutputStream() (Java method) curPtrVectorMap (Java field) currentDirectory (Java field) currentIncludeInstruction (Java field) currentIncludeInstruction() (Java method) currentParsedFile (Java field) currentParsedFile() (Java method) currentTranslationUnitSymbolTable (Java field) currentTranslationUnitSymbolTable() (Java method) currentUnit (Java field) curSymbolTable (Java field) curSymbolTable() (Java method) curUnit (Java field) curUnit() (Java method) curUnitIsActiveUnit (Java field) curUnitIsContext (Java field) curVectorMap (Java field) cutChild(int) (Java method), [1], [2] cutCostsString(Tree) (Java method) CYCLE (Java field) cycleArrows (Java field) cyclingArrows() (Java method)

D

D_CLASS (Java field) dagSize(TapList) (Java method) danglingCircularTypes (Java field) danglingMessages (Java field) DataFlowAnalyzer (Java class) DataFlowAnalyzer(CallGraph, String, TapList) (Java constructor) dataList (Java field) deadTrees() (Java method) debug (Java field) debugActivity (Java field) debugActivity() (Java method) debugADHereUnit (Java field) debugADMM (Java field) debugADMM() (Java method) debugAdMode (Java field) debugAdMode() (Java method) DEBUGCALL (Java field) DEBUGHERE (Java field) debugLabel(String, int) (Java method) debugPassives (Java field) debugPointsCounter (Java field) decideForwardDeclarations() (Java method) declarationLevelMustInclude(SymbolTable) (Java method) declarationMatchesCall(TypeSpec, TypeSpec[]) (Java method) declarationsBlock (Java field) declarationUnit (Java field), [1] declarator (Java field) declare (Java field) declareAllSymbolDecls() (Java method), [1] declareAllSymbolsIn(Tree, Tree, TapList, Tree, int, boolean, boolean, Instruction) (Java method) declareBindCInMemoryMap() (Java method) DECLARED (Java field) declareDiffIsReturnVar(VariableDecl, Unit, Unit) (Java method) declareDiffSymbolTableIfNew(Unit, SymbolTable) (Java method) declaredMemoryMap (Java field), [1] declaredSymbolDecls(SymbolTable, SymbolTable) (Java method) declaredZoneInfo(int, int) (Java method) declaredZonesNb(int) (Java method) declaredZonesNotFromEntryToExit(HeaderBlock, int) (Java method) declareFormalParamsLevel() (Java method) declareIsMaskDefinition() (Java method) declaresItsIterator (Java field) declaresUnits(SymbolTable) (Java method) declaresVariable(Tree, String) (Java method) declareUsageInstruction(Instruction) (Java method) declsAfter (Java field) DeclStruct (Java class) Decompiler (Java class) Decompiler(Printer, String) (Java constructor) decompileTree(Tree, int, boolean, boolean) (Java method), [1], [2] decrTraceIndent(int) (Java method) DEFAULT (Java field) defaultMixedLangInfos() (Java method) defaultUse (Java field) defineAnchor(String) (Java method), [1] definitionModule (Java field) definitionSymbolTable (Java field), [1] defPositions (Java field) delete() (Java method), [1] delete(T, TapList) (Java method) deleteAll(TapList, TapList) (Java method) deleteAllStartVars(TapList, TapList) (Java method) deleteCols(int, int) (Java method) deleteColsAndRows(int, int) (Java method) deleteContainsString(String, TapList) (Java method) deleteNth(TapList, int) (Java method) deleteRows(int, int) (Java method) deleteString(String, TapList) (Java method) deleteUnit(Unit) (Java method) deleteUnitFromSymbolTable(Unit) (Java method) deleteUnitIfDifferent(Unit, CallGraph) (Java method) delKind(int) (Java method) delNewSymbolHolder(NewSymbolHolder) (Java method) dependsOn (Java field) dependsOn() (Java method), [1] DepsAnalyzer (Java class) depsAnalyzer (Java field) depsAnalyzer() (Java method) depsPathNames() (Java method) depsPathZones() (Java method) depsZones() (Java method) depth() (Java method) derivationFrom (Java field) derivs (Java field) derivsKeyTreeList (Java field) destination (Java field), [1] destination() (Java method), [1] destinationType (Java field), [1] detachFromUpperUnit(Unit) (Java method) DGNodeNode (Java class) DGNodeNode(NewBlockGraphNode) (Java constructor) DiffAssignmentNode (Java class) DiffAssignmentNode(Tree, int, Tree, InstructionMask, Tree, TapList, TapList, TapList, TapList) (Java constructor) diffCallGraph() (Java method), [1] diffCallNeeded(Tree, ActivityPattern, Unit, ActivityPattern, BoolVector, BoolVector, TapList, Block, Instruction) (Java method) DiffConstants (Java class) differentiateBlock(Block, Block, Block, int, ToBool) (Java method) differentiateChainedIncludes(Instruction, String, boolean) (Java method) differentiateCommonName(String, int) (Java method) DIFFERENTIATED (Java field) differentiateDeclarationsOfBlock(Block, int, Unit, SymbolTable, SymbolTable, int, boolean) (Java method) differentiatedIncludeNames (Java field) differentiateIncludeName(String, String) (Java method) differentiateProcedure() (Java method) differentiateProcedureHeader(Tree, Tree, ToObject, ActivityPattern, SymbolTable, SymbolTable, int, TapList) (Java method) differentiateSaveList(SymbolTable) (Java method) differentiateTypeSpec(SymbolTable, SymbolTable, int, String, int, boolean, boolean, ArrayDim, ArrayDim, String, String, Tree, Tree) (Java method), [1], [2], [3], [4], [5], [6], [7], [8] differentiateTypeTree(Tree, SymbolTable) (Java method) DifferentiationEnv (Java class) DifferentiationEnv(CallGraph, String[][]) (Java constructor) diffFileSuffix (Java field) diffFromTypeDecl (Java field) diffFunctionIsFunction(Unit) (Java method)

diffInfo (Java field) diffInstruction (Java field) diffKind (Java field), [1] diffKind() (Java method) DiffLivenessAnalyzer (Java class) diffLivenessAnalyzer (Java field) diffLivenessAnalyzer() (Java method) diffLivenesses() (Java method) diffLivenessesCkp() (Java method) diffLivenessTopDownContext() (Java method) diffMemoryMap(Unit, Unit) (Java method) diffMode (Java field) diffOverwrites() (Java method) diffOverwritesCkp() (Java method) DiffPattern (Java class) diffPattern() (Java method) DiffPattern(String, TapList, TapList) (Java constructor) diffPatterns() (Java method) diffR (Java field) diffRecv (Java field) DiffRoot (Java class) DiffRoot(Unit, TapList, TapList) (Java constructor) diffRoots (Java field) diffSymbolName(ActivityPattern, String, SymbolTable, boolean, boolean, boolean, Tree, WrapperTypeSpec[], boolean, int, int, int, Tree) (Java method) diffSymbolTree(ActivityPattern, Tree, SymbolTable, boolean, boolean, boolean, Tree, boolean, int, int, int, Tree) (Java method) diffTypeDeclSymbolHolder (Java field) diffTypeSpec (Java field) diffValue (Java field), [1] diffVarRef(ActivityPattern, Tree, SymbolTable, boolean, Tree, boolean, boolean, Tree) (Java method) diffVarRefNoCopy(ActivityPattern, Tree, SymbolTable, boolean, Tree) (Java method) diffW (Java field) diffZonesManaged(ActivityPattern) (Java method) diffZonesRequired(ActivityPattern) (Java method) dimensions() (Java method) directEntryExitMask(HeaderBlock, int[], int) (Java method) Directive (Java class) Directive(int) (Java constructor) directives (Java field), [1] dirIndexSymbolHolder (Java field) dirNumberMaxSymbolHolder (Java field), [1] dirNumberSymbolHolder (Java field) dirtyOverwrittenIndex (Java field) disambigNewName(String) (Java method) disjointPath(Tree, Tree) (Java method) dispatchModifiers(Tree[], Tree, TapPair, ToBool, TapList, TapList, TapList, Tree, Instruction, SymbolTable) (Java method) display() (Java method) distance(BoolVector, int) (Java method) divProtectedExprs(Tree, Tree) (Java method) DO_LOOP (Java field) doActivity (Java field) doActivity() (Java method) doGet(HttpServletRequest, HttpServletResponse) (Java method), [1], [2] dominator (Java field) doMPI (Java field) doMPI() (Java method) dontSaveUnused (Java field) doOpenMP (Java field) doOpenMP() (Java method) doPost(HttpServletRequest, HttpServletResponse) (Java method), [1], [2] doRecompute (Java field) doRecompute() (Java method) doTBR (Java field) doTBR() (Java method) DotDecompiler (Java class) DotDecompiler(Printer, String) (Java constructor) doubleBorder (Java field) doubleDoubleRealSize (Java field) doubleRealSize (Java field) doUpdateAfterImports(SymbolTable, TapList) (Java method), [1], [2], [3], [4], [5] doUsefulness (Java field) doUsefulness() (Java method) down(int) (Java method), [1], [2] draw(Graphics) (Java method), [1], [2], [3], [4], [5] dump() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25], [26] dump(int) (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21] dump(int[]) (Java method) dump(int[], int[]) (Java method) dump(Tree, int) (Java method) dumpAllDataFlows(TapList) (Java method) dumpAllFlowGraphs(TapList, int) (Java method) dumpAllSymbolTables(TapList, boolean, int) (Java method) dumpBoolMatrixOnTrace(BoolMatrix, int[], int[]) (Java method) dumpBoolVector(BoolVector, int[], String) (Java method) dumpCallGraph (Java field) dumpCompactCallGraph(TapList) (Java method) dumpDataFlow (Java field) dumpDataFlow() (Java method) dumpDataFlow(boolean, boolean, boolean, boolean) (Java method) dumpDeclaredZones(String) (Java method) dumpDeps (Java field) dumpDiffFlowGraphs (Java field) dumpDiffSymbolTables (Java field) dumpExternalZones() (Java method) dumpFlowGraphs (Java field) dumpInOut (Java field) dumpInstructions(int) (Java method) dumpMap(TapList) (Java method) dumpObject(Object) (Java method) dumpOnTrace(Object) (Java method) dumpOutputStream (Java field) dumpPointers (Java field) dumps (Java field) dumpSideEffectZones() (Java method) dumpSymbolTableIfNew(SymbolTable, int) (Java method) dumpSymbolTables (Java field) dumpTestCaseCarry() (Java method) dumpUnitNames (Java field) dumpZones (Java field) dumpZones() (Java method) duplicableUnitNames (Java field) duplicableUnitNames() (Java method) DynMemoryDifferentiator (Java class) dynMemoryDifferentiator (Java field) DynMemoryDifferentiator(DifferentiationEnv) (Java constructor)

E

easilyDeclared() (Java method) Edge (Java class) Edge() (Java constructor) edges (Java field) elapsed() (Java method) elementType (Java field) elementType() (Java method), [1], [2], [3] eliminateSpaces() (Java method) ELSEWHERE (Java field) emitMessage(int, Tree, String, int) (Java method) empty() (Java method) EMPTY_CONTEXT (Java field) emptyCopiedUnitSuffix (Java field) encloseInWhereMask(InstructionMask) (Java method) enclosingBlock() (Java method) enclosingIncludeIsEmptyOr(Tree) (Java method) enclosingLoop() (Java method) enclosingLoopBLocks() (Java method) enclosingLoops() (Java method) enclosingMask (Java field) enclosingUnitOfInterface (Java field) enclosingUnits() (Java method) endAnchorRef() (Java method), [1] endOffset (Java field), [1] endVars (Java field) enteringArrows() (Java method) ENTRY (Java field) ENTRY_BLOCK (Java field) entryArrows (Java field) entryAvlX() (Java method) EntryBlock (Java class) entryBlock (Java field) entryBlock() (Java method) EntryBlock(SymbolTable) (Java constructor) EntryBlockNode (Java class) EntryBlockNode(EntryBlock, ByteArrayOutputStream, boolean) (Java constructor) entryBlocks (Java field) entryDiffLivenessesCkp() (Java method) entryDiffLivenessesCkpOnDiffPtr() (Java method) entryDiffOverwritesCkp() (Java method) entryDiffOverwritesCkpOnDiffPtr() (Java method) entryReqX() (Java method) ENUMTYPE (Java field) EnumTypeSpec (Java class) EnumTypeSpec(String, Tree) (Java constructor) eolContinuationChar (Java field) EQ (Java field) eqOrCopyOfEq(ZoneInfo, ZoneInfo) (Java method) eqOrDisjointRef(Tree, Tree, Instruction, Instruction) (Java method) equalLength(ArrayDim, int) (Java method) equalLists(TapIntList, TapIntList) (Java method) equalMasks(InstructionMask, InstructionMask) (Java method) equals(BoolVector, int) (Java method) equalsBoolMatrix(BoolMatrix) (Java method) equalsBoolMatrix(BoolMatrix, int, int) (Java method) equalsCompilDep(TypeSpec) (Java method) equalsCompilDepNeglectLengthes(TypeSpec) (Java method) equalsCompilIndep(TypeSpec) (Java method) equalsDiffTypeSpecAndTypeSpec() (Java method) equalsImportedModules(TapList, TapList) (Java method) equalsInclude(String, Tree) (Java method) equalsLiterally(TypeSpec) (Java method) equalsNeglectSizes(TypeSpec) (Java method) equalsNeglectSizesNeglectLengthes(TypeSpec) (Java method) equalsOther(VariableDecl) (Java method)

equalsTree(Tree) (Java method), [1], [2], [3], [4] equalValues(Tree, Tree) (Java method) equalValues(Tree, Tree, Instruction, Instruction) (Java method) EQUIVALENCE (Java field) eraseDiffSymbolHolder(int) (Java method) erasePrivateInfo(Unit) (Java method) evalsToGEZero(Tree) (Java method) evalsToGTZero(Tree) (Java method) evalsToLTZero(Tree) (Java method) evalsToMinusOne(Tree) (Java method) evalsToOne(Tree) (Java method) evalsToZero(Tree) (Java method) exchangeFlowArrowsTo(Block, Block) (Java method) existsArrow(NewBlockGraphNode, NewBlockGraphNode) (Java method) EXIT (Java field) exitActivity() (Java method) exitArrows (Java field) exitAvlX() (Java method) ExitBlock (Java class) exitBlock (Java field) exitBlock() (Java method) ExitBlock(SymbolTable) (Java constructor) ExitBlockNode (Java class) ExitBlockNode(ExitBlock) (Java constructor) exitBlocks (Java field) exitDiffLivenesses() (Java method) exitDiffLivenessesOnDiffPtr() (Java method) exitDiffOverwrites() (Java method) exitDiffOverwritesOnDiffPtr() (Java method) exitReqX() (Java method) exitsFromLoopAndLoopSymbolTable() (Java method) exitUsefulness() (Java method) expandAllIncludeFile (Java field) expandDiffIncludeFile (Java field) explicitWhenImplicitArray(Tree, WrapperTypeSpec, WrapperTypeSpec, SymbolTable) (Java method) exportFunctionTypeSpec() (Java method) exportOneArgumentType(String, WrapperTypeSpec) (Java method) ExpressionDifferentiator (Java class) expressionDifferentiator (Java field) ExpressionDifferentiator(DifferentiationEnv) (Java constructor) expRK (Java field) EXT (Java field) EXTAD (Java field) extendedDeclaredToClass(int) (Java method) extendedDeclaredToClass(int, SymbolTable) (Java method) extendedDeclaredToPublicRanks(TapIntList, SymbolTable) (Java method) extendedDeclaredToVectorIndex(int, int, int[]) (Java method) extendedDeclaredToVectorIndex(int, int, int[], SymbolTable, Unit) (Java method) extendedDeclaredToZoneInfo(int) (Java method) extendedDeclaredToZoneInfo(int, SymbolTable, Unit) (Java method) extendStringWithSuffix(String, String) (Java method) externalShape (Java field) externalSymbolTable() (Java method) ExtFilesPanel (Java class) ExtFilesPanel(int) (Java constructor) extractAllZoneInfosInto(SymbolTable) (Java method) extractFiles(String, String) (Java method) extractIntZoneInfos() (Java method) extractPrivateTrees(Tree, SymbolTable, boolean, boolean) (Java method) extractPtrZoneInfos() (Java method) extractRealZoneInfos() (Java method) extractSumReductionTrees(Tree, SymbolTable) (Java method) extractZoneInfos() (Java method) extraInfo() (Java method), [1] extraSideEffectVariables (Java field)

F

factor (Java field) factorKeyTreeList (Java field) FALSE (Java field) fg (Java field) FGArrow (Java class) FGArrow() (Java constructor) FGArrow(Block, int, int, Block) (Java constructor) FGArrow(Block, int, int, Block, boolean) (Java constructor) FGArrow(Block, int, TapIntList, Block) (Java constructor) FGArrow(Block, int, TapIntList, Block, boolean) (Java constructor) FGConstants (Java class) FGThreads (Java class) FIELD (Java field) FieldDecl (Java class) FieldDecl(String, WrapperTypeSpec) (Java constructor) FieldDecl(Tree, WrapperTypeSpec) (Java constructor) fields (Java field) fileError(Tree, String) (Java method) fileName (Java field) FilesPanel (Java class) FilesPanel() (Java constructor) fileWarning(int, int, String) (Java method) fileWarning(int, Tree, String) (Java method) finalCycle() (Java method) finalName() (Java method) findAlreadyCopiedType(TapList, ToBool) (Java method) findArrayTriplet(Tree) (Java method) findAssocAddresTypeDeclSymbolTable() (Java method) findCompositeTypeSpec(String) (Java method) findDiffFuncName(ActivityPattern, SymbolDecl, int, SymbolTable, Tree, boolean, boolean) (Java method) findDimColons(Tree) (Java method) findExtraInfos(Unit) (Java method) findFunctionDecl(WrapperTypeSpec[], WrapperTypeSpec, Tree) (Java method) findFunctionTypeSpecUnderTypeSpec(WrapperTypeSpec) (Java method) findHostingSymbolTable(SymbolTable, String, Tree) (Java method) findInlinedFunctions(Unit) (Java method) findMessagePassingChannel(CallGraph) (Java method) findMessagePassingChannelZones(CallGraph) (Java method) findNamedSymbolDecl(TapList, String) (Java method) findOneFunctionDecl(WrapperTypeSpec[], Tree) (Java method) findOptimalLoops() (Java method) findProtectedSymbolDecls() (Java method) findPublicSymbolDecls() (Java method) findRankOfDeclarator(Tree, String) (Java method) findRankToInsert(Tree, Tree) (Java method) findShortName(TapList, TapList) (Java method) findSizeofCall(Tree) (Java method) findTypeDecl(TapList) (Java method) findTypeSpec(TapList, WrapperTypeSpec) (Java method) findUnit(TapList, Unit) (Java method) findUsedLabels() (Java method) finishLastMetaTypes(TapList, SymbolTable) (Java method) first (Java field), [1] firstDeclaredZone(int) (Java method) firstInstrAfterDecls() (Java method) fixed (Java field) FIXEDPOINT_LOOP (Java field) FIXEDPOINTLOOP (Java field) FixedTree (Java class) FixedTree(Operator) (Java constructor) fixImplicits() (Java method), [1] fixImportedDeclarations() (Java method) fixInterface (Java field) flow (Java field) flow() (Java method), [1] FlowGraphBuilder (Java class) FlowGraphDifferentiator (Java class) flowGraphDifferentiator (Java field) FlowGraphDifferentiator(DifferentiationEnv) (Java constructor) FlowGraphNormalizer (Java class)

FlowGraphNormalizer(EntryBlock, TapList, ExitBlock) (Java constructor) flushOutputStream() (Java method) followsDirections(int, int, int, TapList) (Java method) forceDiffInclude(String) (Java method) forceStaticSave(RefDescriptor) (Java method) formalArgRank (Java field), [1], [2] formalArgRankInOrigUnit (Java field) formalArgsActivity(ActivityPattern) (Java method) formalArgsPointerActivity(ActivityPattern, int) (Java method) formalArgumentsNb() (Java method) formats (Java field) formats() (Java method) FORTRAN (Java field) FORTRAN2003 (Java field) FORTRAN90 (Java field) fortran90LineLength (Java field) fortran90OutputLineLength (Java field) FORTRAN_FAMILY (Java field) FortranDecompiler (Java class) FortranDecompiler(Printer, String) (Java constructor) fortranRootSymbolTable() (Java method) FortranStuff (Java class) fortranStuff() (Java method) FortranStuff(Unit) (Java constructor) FP_CLASS (Java field) fr.inria.tapenade.analysis (package) fr.inria.tapenade.differentiation (package) fr.inria.tapenade.frontend (package) fr.inria.tapenade.graphicsutils (package) fr.inria.tapenade.gui (package) fr.inria.tapenade.ir2tree (package) fr.inria.tapenade.prettyprint (package) fr.inria.tapenade.representation (package) fr.inria.tapenade.toplevel (package) fr.inria.tapenade.utils (package) freeDeclaredZone(int) (Java method) from (Java field), [1] fromImplicitType() (Java method) fromInclude (Java field) fromInclude() (Java method), [1], [2] fromIncludeCopy(Instruction, boolean) (Java method) fromIncludeRootName() (Java method) fromObjectArray(T[]) (Java method) fullArrayTriplet(Tree) (Java method) FUNCNAME (Java field) funcName() (Java method) FUNCTION (Java field), [1] FUNCTION_NOT_EXTERNAL_NOR_INTERFACE (Java field) FUNCTION_NOT_INTERFACE (Java field) FunctionDecl (Java class) FunctionDecl() (Java constructor) functionDecl() (Java method) FunctionDecl(Tree, Unit) (Java constructor) FunctionDecl(Tree, Unit, SymbolTable) (Java constructor) FunctionDecl(Tree, Unit, SymbolTable, String) (Java constructor) functionDecls (Java field), [1] FunctionDeclStruct (Java class) FunctionDeclStruct(FunctionDecl) (Java constructor) functionDiffFormalRequired(ActivityPattern, boolean) (Java method) functionNames (Java field) FUNCTIONTYPE (Java field) FunctionTypeSpec (Java class) FunctionTypeSpec() (Java constructor) functionTypeSpec() (Java method), [1] FunctionTypeSpec(WrapperTypeSpec) (Java constructor) FunctionTypeSpec(WrapperTypeSpec, TapList) (Java constructor) FunctionTypeSpec(WrapperTypeSpec, WrapperTypeSpec[]) (Java constructor) FunctionTypeSpec(WrapperTypeSpec, WrapperTypeSpec[], boolean) (Java constructor) fuseLabelled(String, Block, Tree) (Java method) fuseWith(NewBlockGraphNode) (Java method)

G

gatherMultiInstructions(SymbolTable, Unit, NewSymbolHolder, IterDescriptor) (Java method) GE (Java field) GeneralLibReader (Java class) GeneralLibReader(String, String, CallGraph, int) (Java constructor) generate(Unit, boolean, boolean, boolean, TapList, TapList) (Java method) generateDeclaratorTree(WrapperTypeSpec, TapList, Tree, WrapperTypeSpec) (Java method) generateForwardTree() (Java method) generateGlobalDeclarations(CallGraph, TapList, TapList, Tree, int, boolean) (Java method) generateHeaderParamsList(SymbolTable) (Java method) generateInclude(TapList, String) (Java method) generateInitializationTree() (Java method), [1] generateMissingDeclarations(Unit, SymbolTable, boolean, boolean, Block, boolean) (Java method) generateParameterList() (Java method) generateReverseListOfTree(Block, TapList, TapList, boolean) (Java method) generateTree(boolean, TapList, TapList) (Java method), [1], [2], [3], [4], [5], [6], [7], [8] generateTree(SymbolTable, TapList, TapList, boolean, TapList) (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14] generateTree(TapList, SymbolTable) (Java method), [1], [2], [3], [4] generateTreeChained(TapList, boolean, String, TapList, TapList) (Java method) genericArrow (Java field) genTypeDeclName() (Java method) get() (Java method), [1], [2], [3] get(int) (Java method) get(int, int) (Java method) getAddButton() (Java method) getAdditionalDuplicatedDeclaredZoneInfos() (Java method) getAdjoint(ActivityPattern) (Java method) getAlignmentBoundary(int, boolean, TapList) (Java method) getAllCommonNames() (Java method) getAllDiffPatterns(int) (Java method) getAllDiffPatternsAndUnits(int) (Java method) getAllDiffs() (Java method) getAllDiffs(ActivityPattern) (Java method) getAllDiffs(int) (Java method) getAllDiffsAndMode() (Java method) getAllDiffsPlusCopy() (Java method) getAllDimensions() (Java method), [1], [2] getAllInterfaceDecls() (Java method) getAllMessagePassingChannels() (Java method) getAllMessagePassingChannelZones() (Java method) getAllMessages(CallGraph, CallGraph, TapList, boolean) (Java method) getAllocatedRef(Tree) (Java method) getAllTopFunctionDecls() (Java method) getAllTopSymbolDecls() (Java method) getAllTopVariableDecls() (Java method) getAllTypeDecls() (Java method) getAllVariableDecls() (Java method) getAnalyseModePanel() (Java method) getAnnotation(String) (Java method) getAnnotationForActivityPattern(Tree, ActivityPattern, String) (Java method) getAnnotationPair(String) (Java method) getAnyContainingDiffUnit(Unit, Unit) (Java method) getAnyIntrinsicUnit(String) (Java method) getAnyNonVarUnit(String, Unit) (Java method) getAnyUnit(String) (Java method) getArguments(Tree) (Java method) getArrow(int) (Java method) getAssGotoInfoDone() (Java method) getAssocAddressIndex(int) (Java method) getAttachedVariableDecl(Tree) (Java method) getBindCValue(Tree, int) (Java method) getBlock(Block) (Java method), [1], [2], [3], [4] getCall(Tree) (Java method) getCallArrow(Unit, Unit) (Java method) getCalledName(Tree) (Java method) getCalledNameString(Tree) (Java method) getCalledUnit(Tree, SymbolTable) (Java method) getCallFunctionNameString(Tree) (Java method) getCallGraph() (Java method), [1] getCallingActivityPattern(Unit, TapList) (Java method) getClassDecl(String) (Java method) getClassDecl(Tree) (Java method) getClassNameString(Tree) (Java method) getCommon(String) (Java method) getCommonMap(String) (Java method) getCommonNames() (Java method), [1] getCommonRoot(SymbolTable) (Java method) getConstantDecl(String) (Java method) getControlPanel() (Java method) getControlStruct() (Java method) getControlTree() (Java method) getCopyForDiff() (Java method) getCost(Tree) (Java method) getDeadBlocks() (Java method) getDecl(String, int, boolean) (Java method) getDecl(String, int, boolean, TapList) (Java method) getDecl(String, int, int, boolean, TapList) (Java method) getDecl(String, int, int, int, boolean) (Java method) getDeclared(int, int[]) (Java method) getDeclaredKindZones(TapIntList, int, boolean) (Java method) getDeclaredZoneInfos(int) (Java method) getDescription() (Java method) getDestLangCallee() (Java method) getDiff() (Java method) getDiffCallNames() (Java method) getDifferentiateButton() (Java method) getDifferentiateButtons() (Java method) getDiffForModeAndActivity(int, ActivityPattern) (Java method) getDiffFuncNameCheckBox() (Java method) getDiffFuncNameTextField() (Java method) getDiffIncludeName(String) (Java method) getDiffOfModule(Unit) (Java method) getDiffOfUnit(Unit, ActivityPattern, int) (Java method) getDiffReturnType(int) (Java method) getDiffSymbolHolder(int, ActivityPattern) (Java method) getDiffVarNameCheckBox() (Java method) getdiffVarNameTextField() (Java method) getDirectiveText(Tree) (Java method) getDominatorArrows() (Java method) getDump() (Java method) getDumpFile() (Java method) getElementalIntrinsicTypeConverter(Tree[]) (Java method) getExistingCopy(TapList) (Java method) getExistingOrig(TapList) (Java method) getExplicitRow(int) (Java method) getExtension(String) (Java method) getFGArrowTestCase(int, int) (Java method) getFGArrowTo(Block) (Java method) getFieldRank(Tree) (Java method) getFieldType(Tree) (Java method) getFilesList() (Java method), [1] getFileUnit(String) (Java method) getFinalGotoRank() (Java method) getFirstVariableDecl() (Java method) getForcedScopingNames(Block) (Java method) getForwardDeclaration() (Java method) getFreeDeclaredZone(int) (Java method) getFrontierInZones(TapList) (Java method) getFrontierLiveness(TapList) (Java method) getFrontierModifiedZones(TapList) (Java method) getFrontierOfParallelRegion(Block) (Java method) getFrontierOverwrite(TapList) (Java method) getFrontierTBR(TapList) (Java method) getFrontierUnusedZones(TapList) (Java method) getFunctionBinding() (Java method) getFunctionDecl(String, TypeSpec, TypeSpec[], boolean) (Java method) getFunctionDecl(String, TypeSpec, TypeSpec[], String, boolean) (Java method) getFunctionNotExternalNorInterfaceDecl(String) (Java method) getFunctionNotInterfaceDecl(String) (Java method) getHtmlCheckBox() (Java method) getIdentString(Tree) (Java method) getImplicitIdentityIndices() (Java method) getImportedDecl(String, int) (Java method) getIncludeTree(Tree) (Java method) getInitializationTree() (Java method), [1] getInitTree() (Java method) getInlinedUnits() (Java method) getInOutOfRegion(TapTriplet, Unit) (Java method) getInputLanguage() (Java method) getInputLanguageButtons() (Java method) getInputVariablesPanel() (Java method) getInstance() (Java method) getInstructionBoolInfo(BlockStorage, Instruction) (Java method) getInterfaceDecl(String) (Java method)

getIOeffectOfIOspec(Tree, int, String, ToBool, ToBool, SymbolTable) (Java method) getIterationsBetweenPushAndPop(Block) (Java method) getLabelled(String) (Java method) getLabelVariablesEffect() (Java method) getLastOffset(TapList) (Java method) getLengthTree() (Java method) getLineNumber(Tree) (Java method) getListOfStatements(Tree) (Java method) getMainUnit() (Java method) getMapClass(int, int[]) (Java method) getMessagePassingMPIcallInfo(String, Tree, int, Block) (Java method) getMetavarsFromPattern(Tree, TapList) (Java method) getMixedLanguageFunctionName(String, int, int) (Java method) getModifierFrom(ModifiedTypeSpec) (Java method) getModule(String) (Java method) getModuleDecl(String) (Java method) getModulesFromInterfaceDecl(Tree) (Java method) getMsgLevelCheckBox() (Java method) getMsgLevelComboBox() (Java method) getMultiDirDimensionMax() (Java method) getName() (Java method) getNamedScope(String) (Java method) getNameFromBindC() (Java method) getNameSpaceDecl(String) (Java method) getNCols() (Java method) getNewPushPopNumber() (Java method) getNewSymbolHolder(Tree) (Java method) getNoLibCheckBox() (Java method) getNRows() (Java method) getObject(Tree) (Java method) getOnlyReadSmallActivePrimals(Block) (Java method) getOperatorDeclarationInstruction(SymbolDecl, int, SymbolTable) (Java method) getOptionalDim(Tree[], SymbolTable) (Java method) getOptionalMask(Tree[], SymbolTable) (Java method) getOptionalParameterDeclsNumber() (Java method) getOrigLangCaller() (Java method) getOrigUnitOfInterface(CallGraph) (Java method) getOrigUnitOfPrimalCopy(Unit) (Java method) getOtherBindType(WrapperTypeSpec) (Java method) getOtherLangFunctionDeclFromBindC(String, int) (Java method) getOtherLanguageName(String, int, int) (Java method) getOutputDirectory() (Java method) getOutputDirectoryTextField() (Java method) getOutputFileNameCheckBox() (Java method) getOutputFileNameTextField() (Java method) getOutputLanguageButtons() (Java method) getOutputVariablesPanel() (Java method) getParameterPassing(int, int, TapList) (Java method) getParamExprs() (Java method) getParamRank() (Java method) getPatternsForCallingUnitPattern(ActivityPattern, Unit) (Java method) getPointerDestinationVector(int, Instruction, Block, BoolMatrix, boolean) (Java method) getPointerDestinationZonesTreeHere(TapIntList, Instruction, Block, BoolMatrix, WrapperTypeSpec, Unit, boolean) (Java method) getPosition() (Java method), [1], [2] getPrefixedNamedScope(Tree) (Java method) getPreprocessCheckBox() (Java method) getPreviousFunctionDeclAndNewUnit(String) (Java method) getPrimalCopyOfOrigUnit(Unit) (Java method) getPublicDeps(Unit) (Java method) getPublicDiffLiveness(ActivityPattern) (Java method) getPublicDiffLivenessOnDiffPtr(ActivityPattern) (Java method) getPublicZoneFromDeclaredZone(PublicInfo[], int) (Java method) getPublicZoneFromSideEffectZone(PublicInfo[], int) (Java method) getRank(Tree) (Java method), [1], [2] getRecursivityUnits() (Java method) getRemoveAnnotation(String) (Java method) getRemoveButton() (Java method) getRemoveSchedule(Tree) (Java method) getRenamedTypeDeclName(TapList, Unit) (Java method) getRenamedTypeDeclName(Unit) (Java method) getRequiredDiffVars(ActivityPattern) (Java method) getReverseModeButton() (Java method) getReverseVectorModeButton() (Java method) getRow(int) (Java method) getSaveAll() (Java method) getScrollFiles() (Java method) getSeenSymbolTableShortName(SymbolTable) (Java method) getServletDir() (Java method) getSetCommon(String) (Java method) getSetDiffIncludeInfo(String) (Java method) getSetFieldLocation(TapList, Tree, boolean) (Java method) getSetLabelled(String, TapList, boolean, Tree) (Java method) getSetNameSpaceDecl(Tree) (Java method) getSetNewParallelControls(TapList, BlockStorage, BlockStorage) (Java method) getSharedZonesOfBlock(Block) (Java method) getSideEffect(int) (Java method) getSideEffectKindZones(TapIntList, int) (Java method) getSize() (Java method) getSplitBackward(ActivityPattern) (Java method) getSplitForward(ActivityPattern) (Java method) getStartVars() (Java method) getStaticIterationIndices() (Java method) getStaticIterationSpace() (Java method) getSubInt(int, int, int) (Java method) getSuffix() (Java method) getSymbolDecl(String) (Java method) getSymbolDecl(Tree) (Java method) getTangent(ActivityPattern) (Java method) getTangentModeButton() (Java method) getTangentVectorModeButton() (Java method) getTest(int, int[]) (Java method) getTopClassDecl(String) (Java method) getTopDecl(String, int) (Java method) getTopFunctionDecl(String, TypeSpec, TypeSpec[], boolean) (Java method) getTopFunctionDecl(String, TypeSpec, TypeSpec[], String, boolean) (Java method) getTopInterfaceDecl(String) (Java method) getTopModuleDecl(String) (Java method) getTopNameSpaceDecl(String) (Java method) getTopSymbolDecl(String) (Java method) getTopTypeDecl(String) (Java method) getTopUnitPanel() (Java method) getTopVariableDecl(String) (Java method) getTopVariableOrConstantDecl(String) (Java method) getTransformedSourceUnits(TapList) (Java method) getTranslationUnitSymbolTables() (Java method) getTypeDecl(String) (Java method) getTypeDeclName() (Java method) getTypedFunctionDecl(String, WrapperTypeSpec, WrapperTypeSpec[], boolean, Tree) (Java method) getUnit(String) (Java method) getUnit(String, FunctionTypeSpec) (Java method) getUnit(TapList) (Java method) getUnitDiffArgsByValueNeedOnlyIncrementInfoS(ActivityPattern) (Java method) getUnitDiffArgsByValueNeedOverwriteInfoS(ActivityPattern) (Java method) getUnitDiffInfo(Unit) (Java method) getUnitFormalArgsActivityS(ActivityPattern) (Java method), [1] getUnitName(Tree) (Java method) getUnitOfInterface() (Java method) getUnits() (Java method) getUnits(TapList) (Java method) getUpdateModifiedZones(BoolMatrix, BoolVector) (Java method) getUpdateModifiedZonesT(BoolMatrix, BoolVector) (Java method) getUpperLevelClassUnit() (Java method) getValueFlowingBack() (Java method), [1], [2], [3], [4] getValueFlowingThrough() (Java method), [1], [2], [3], [4], [5] getVariableDecl(String) (Java method) getVariableDeclOfRank(int) (Java method) getVariableOrConstantDecl(String) (Java method) getVariableOrConstantOrFuncNameDecl(String) (Java method) getVariables() (Java method), [1] getVariablesList() (Java method) getViewCheckBox() (Java method) getWhereMask() (Java method) getZoneInfo() (Java method) getZoneNumber() (Java method) getZonesOfCommonInterval(String, int, int, boolean) (Java method) getZonesOfCommonInterval(String, int, int, boolean, ToBool) (Java method) GLOBAL (Java field) globalRootSymbolTable() (Java method) goesInsideControl() (Java method) gotoLabelVar(Tree) (Java method) GraphPanel (Java class) GraphPanel() (Java constructor) GraphViewer (Java class) GT (Java field)

H

h2 (Java field) hasAnArrayDimension(WrapperTypeSpec) (Java method) hasAnchors() (Java method), [1] hasArrayNotation() (Java method) hasATypeOperator(Tree) (Java method) hasCbindingModifier() (Java method) hasCbindingModifier(String) (Java method) hasContext(int, int) (Java method) hasDiffSymbolHolders() (Java method) hasDirective(int) (Java method), [1] hasDirective(TapList, int) (Java method) hasDuplicableLastIndex(Tree, boolean) (Java method) hasFortran90Modifiers(Tree) (Java method) hasGlobalArgs() (Java method) hasInitializations(Tree) (Java method) hasInstructionWithRootOperator(int, String) (Java method) hasInstructionWithRootOperatorAndArrayDeclarator(int) (Java method) hasInterfaceInstruction() (Java method) hasKindEqual() (Java method) hasMainInstruction() (Java method) hasManyInstructions() (Java method) hasModifier(String) (Java method) hasNewFunctionDecl() (Java method) hasNoDeclaredZoneInfos(int) (Java method) hasOneAnnotatedActive(ActivityPattern, Tree, SymbolTable) (Java method) hasOtherCombinableDeclarationPart() (Java method) hasOtherInstruction() (Java method) hasParamElemsInfo() (Java method) hasParsingError (Java field)

hasPointerOnTop(WrapperTypeSpec) (Java method) hasPredefinedDerivatives() (Java method) hasPrivateModifier(TapList) (Java method) hasProtectedModifier(TapList) (Java method) hasPublicModifier(TapList) (Java method) hasSource() (Java method) hasStaticIterationSpace() (Java method) hasTooManyZones() (Java method) hasUndefinedSize() (Java method), [1], [2] haveDifferentiatedVariable(TapList) (Java method) head (Java field), [1] header() (Java method) HeaderBlock (Java class) HeaderBlock(SymbolTable, TapList, TapList) (Java constructor) HeaderBlockNode (Java class) HeaderBlockNode(HeaderBlock, ByteArrayOutputStream, boolean) (Java constructor) headInstr() (Java method) headTree() (Java method), [1] hiddenDiffInitVariables (Java field) hiddenInstrumentedVariables (Java field) hiddenPushPopVariables (Java field) hideActiveTmpZones() (Java method) hidesRef(Tree, Tree) (Java method) hintArrayTreeForCallSize (Java field) hintRootTree (Java field) holdsAPointer (Java field) htmlMessageFileName (Java field) HtmlPrinter (Java class) HtmlPrinter(String, String, String, String) (Java constructor)

I

IAtomTree (Java class) IAtomTree(Operator) (Java constructor) idealX (Java field) idealY (Java field) identIsAFunction(Tree) (Java method) IDENTITY (Java field) identityColumnRanks(int, int[], int[]) (Java method) IF (Java field) IfThenElseStruct (Java class) IfThenElseStruct(Block) (Java constructor) ignoreTypeDeclName(String) (Java method) II_LOOP (Java field) IILOOP (Java field) ILUtils (Java class) immediateDominator (Java field) immediatePostDominator (Java field) implicitDeclarations (Java field) implicits (Java field) importAllClassSymbolTable(SymbolTable, Unit, Unit, boolean) (Java method) importAllSymbolTables() (Java method) importedModules() (Java method) importInheritedClassesSymbolTables() (Java method) importModuleSymbolTable(Unit, Tree, boolean) (Java method) IMPORTS (Java field) inACycle (Java field) inADeclaration (Java field) INCALL (Java field) INCLUDE (Java field) includeDirList (Java field) includeFileList (Java field) includeFileList() (Java method) includeFiles (Java field) includePointedElementsInTree(TapList, ToBool, BoolMatrix, boolean, boolean, boolean) (Java method) includePointedElementsInTree(TapList, ToBool, BoolMatrix, boolean, SymbolTable, Instruction, Unit, boolean, boolean) (Java method) includePointedElementsInZonesTree(TapList, Instruction, BoolMatrix, boolean) (Java method) incorporateAnnotations(Tree, Tree) (Java method) incorporateNewAtomFunc(Tree, Unit) (Java method) INCREMENT_VARIABLE (Java field) incrementByProtectedExpr(int, Tree, Tree, boolean) (Java method) incrTraceIndent(int) (Java method) indent(int) (Java method) indentOnTrace() (Java method) indentOnTrace(int) (Java method) indentPrint(int, String) (Java method) indentPrintln(int, String) (Java method) indentprintlnOnTrace() (Java method) indentprintlnOnTrace(String) (Java method) indentprintOnTrace(String) (Java method) indepsPathNames() (Java method) indepsPathZones() (Java method) indepsZones() (Java method) index (Java field) indexHolder (Java field) indexTree (Java field) INEXPR (Java field) infiniteEndOffset (Java field), [1] infiniteOffset (Java field) infoToStringWithDiffPtr(BoolVector, int[], BoolVector, int[]) (Java method) infoToStringWithDiffPtr(BoolVector, int[], BoolVector, int[], Unit, SymbolTable) (Java method) infoToStringWithDiffPtrWithCycle(BoolVector, int[], BoolVector, int[], BoolVector, BoolVector) (Java method) infoTreesOfRefArgs(Tree[], BoolVector, int[], int) (Java method) InFunction (Java class) InFunction(Unit, Tree, Instruction, Tree) (Java constructor) INHEADER (Java field) InheritanceTree (Java class) inheritanceTree (Java field) inheritedClass (Java field) inInclude(Tree, String) (Java method) inIncludeFile (Java field) inIncludeFile() (Java method) INIT_CONSTRUCTOR (Java field) initActiveFields() (Java method) InitConstructorBlock (Java class) InitConstructorBlock(SymbolTable, TapList) (Java constructor) initCSymbolTable(SymbolTable) (Java method) initFile(int) (Java method), [1] initFortranSymbolTable(SymbolTable) (Java method) InitFrame (Java class) InitFrame() (Java constructor) initFunctionDecls (Java field), [1] initializationTree() (Java method), [1] initializeButRemainsInFwdSweep() (Java method) initializeCGForRootUnit() (Java method), [1], [2], [3], [4] initializeCGForUnit() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9] initializeCumulValue() (Java method), [1], [2], [3], [4], [5] initializedLocalZones() (Java method) initializeFGForBlock() (Java method), [1], [2], [3], [4], [5] initializeInitBlock() (Java method), [1], [2], [3], [4], [5], [6], [7], [8] initializeMayBeRecomputed() (Java method) initializeMultiDirMode() (Java method) initializeMultiDirNumberMax() (Java method) initializeSourceMessageCorrespondence() (Java method) initializeUnit() (Java method), [1], [2], [3], [4], [5], [6], [7], [8] initIndexes(Tree, boolean, DifferentiationEnv) (Java method) InlinedFunctions (Java class) inlinedFunctions (Java field) InlinedFunctions() (Java constructor) inlinedUnit (Java field) INOUT (Java field) InOutAnalyzer (Java class) inOutAnalyzer (Java field) inOutAnalyzer() (Java method) INPUT (Java field) inputLanguage (Java field) inputLanguage() (Java method) InputLanguagePanel (Java class) InputLanguagePanel() (Java constructor) insertBlockAtDest(Block, int, int) (Java method) insertBlockAtOrig(Block, int, int) (Java method) insertBlockBefore(Block) (Java method) insertBlockBeforeLoopEntry(Block) (Java method) insertCols(int, int) (Java method) insertColsAndRows(int, int) (Java method) insertInstructionTree(Tree, boolean) (Java method) insertInstructionWatchingIncludes(Instruction, TapList, boolean, TapList, TapList) (Java method) insertLetStructure() (Java method), [1], [2], [3], [4], [5], [6], [7], [8] insertLetStructureChained(TapList, SymbolTable) (Java method) insertRows(int, int) (Java method) inside (Java field) inStdCIncludeFile() (Java method), [1] instrHasSideEffect(Tree) (Java method) Instruction (Java class) Instruction() (Java constructor) instruction() (Java method) instruction(SymbolTable) (Java method) Instruction(Tree) (Java constructor) Instruction(Tree, Instruction) (Java constructor) Instruction(Tree, Instruction, Block) (Java constructor) InstructionMask (Java class) InstructionMask(Tree, InstructionMask) (Java constructor) instructions (Java field) instructionsOnDeclaredZones(Tree, SymbolTable, SymbolTable, String, Unit, BoolVector, int[], boolean, boolean, boolean, int, Instruction) (Java method) Int2ZoneInfo (Java class) Int2ZoneInfo(int, ZoneInfo) (Java constructor) intConstantValue(Tree) (Java method) integerSize (Java field) integerTypeSpec (Java field) interestingFuseWith(NewBlockGraphNode, NewBlockGraph) (Java method) INTERFACE (Java field), [1] InterfaceDecl (Java class) InterfaceDecl() (Java constructor) InterfaceDecl(Tree) (Java constructor) InterfaceDecl(Tree, FunctionDecl, SymbolTable, Unit) (Java constructor) InterfaceDeclStruct (Java class) InterfaceDeclStruct(InterfaceDecl) (Java constructor) interfaceUnits() (Java method), [1] intersection(TapIntList, TapIntList) (Java method) intersects(BoolVector, int) (Java method) intersects(TapIntList) (Java method) intersects(TapIntList, TapIntList) (Java method) intersectsExtendedDeclared(BoolVector, int[], int, TapIntList, TapIntList, SymbolTable, Unit) (Java method) intersectsExtendedDeclared(BoolVector, int[], int, Tree, ToBool, Instruction, TapIntList, SymbolTable, Unit) (Java method) intersectTreeEquals(TapList, TapList) (Java method) INTKIND (Java field) intrinsicUnits() (Java method) intToReal(TapList, SymbolTable) (Java method), [1], [2], [3], [4] intToReal(WrapperTypeSpec, TapList, SymbolTable) (Java method) intValue() (Java method), [1] intZoneInfos (Java field) intZoneNb (Java field) inUseNewSymbolHolders (Java field) IO_END (Java field) IO_EOR (Java field) IO_ERR (Java field) IO_GOTO (Java field) isA(int) (Java method) isA(TypeSpec, int) (Java method) isAccessDeclValue(Tree, String) (Java method) isAccessedThroughPointer(Tree) (Java method) isAccessibleDirectlyFromVariable(Tree) (Java method) isACIOSymbol(Tree) (Java method) isACleanDoLoop() (Java method) isAConstModified(Tree) (Java method) isAContext() (Java method) isActive() (Java method), [1] isActiveArg(int, BoolVector, WrapperTypeSpec, int) (Java method) isActiveSymbolDecl() (Java method) isActiveUnit(ActivityPattern) (Java method) isActiveUnit(Unit) (Java method) isADeclaration() (Java method) isADeclaration(Tree) (Java method) isADeclMayAppearFirst(Tree) (Java method) isADoLoop() (Java method) isAFortranOverloadedOperator(Tree) (Java method) isAFree(Tree) (Java method) isAFunction() (Java method), [1] isAJumpIntoNextCase (Java field) isAllocatable (Java field) isAllocatableAndTarget(Tree) (Java method) isALoop() (Java method), [1] isAMalloc(Tree) (Java method) isAMessagePassingChannelZone(int) (Java method) isaModifiedFloatFloat(Tree) (Java method) isAnAllocatablePointer(Tree, Instruction) (Java method) isANameSpace() (Java method) isANewSymbolRef(Tree) (Java method) isAnIf() (Java method) isAnIoCall(Tree) (Java method) isAnIOType (Java field) isAnIOTypeSpec(SymbolTable) (Java method), [1], [2], [3] isAnIOVariable() (Java method) isAnnotatedActive(ActivityPattern, Tree, SymbolTable) (Java method) isAnnotatedReqX(ActivityPattern, Tree) (Java method) isAPow(SymbolTable, Tree) (Java method) isAProcedure() (Java method) isArray (Java field) isArray() (Java method), [1], [2], [3] isAStringManipulation(Tree) (Java method) isATimesLoop() (Java method) isAtom() (Java method), [1], [2], [3], [4], [5] isATrueSymbolDecl (Java field) isAugmentedDouble() (Java method) isAugmentedDoubleBase() (Java method) isAUnitPlaceHolder(Tree) (Java method) isAVariableOnlyDeclaration(Tree) (Java method) isAVarRef(Tree, SymbolTable) (Java method)

isAVarRefOrConstant(Tree) (Java method) isAWhereControl() (Java method) isAWritableIdentVarRef(Tree, SymbolTable) (Java method) isAWritableVarRef(Tree, SymbolTable) (Java method) isBooleanBase() (Java method) isBottomNode() (Java method) isC() (Java method) isCall() (Java method) isCall(Tree) (Java method) isCalledBy(Unit, ActivityPattern, TapList) (Java method) isCalledFromOtherLanguage() (Java method) isCallingString(Tree, String, boolean) (Java method) isCaseDependent() (Java method) isCconst() (Java method) isCGCycle (Java field) isCharacter() (Java method), [1], [2], [3], [4] isCheapDuplicableConstant(Tree, Block, Instruction) (Java method) isClass() (Java method) isCommCreation() (Java method) isCommFree() (Java method) isCommon() (Java method) isComplex() (Java method) isComplexBase() (Java method) isConsideredRemoved (Java field) isConstant() (Java method) isConstructor() (Java method) isContain() (Java method) isContainedFunctionDeclDeclared(Unit) (Java method) isContext() (Java method) isControl() (Java method) isCorMore() (Java method) isCorMore(int) (Java method) isCPlusPlus() (Java method) isCurFunctionName(String) (Java method) isCyclingArrow() (Java method) isDerivationFrom(SymbolDecl, String) (Java method) isDifferentiablePlainType() (Java method) isDifferentiableSymbolDecl(int, boolean) (Java method) isDifferentiableType(TypeSpec) (Java method) isDifferentiated (Java field), [1] isDifferentiated(TapList) (Java method), [1], [2], [3], [4], [5], [6] isDifferentiatedField(int) (Java method) isDiffIncludeFileName(String) (Java method) isDiffPackage() (Java method) isDirective(String) (Java method) isDisconnected() (Java method) isDistribVersion() (Java method) isDontDiff() (Java method) isDoWithIndexUnusedAfterLoop() (Java method) isElemental() (Java method), [1] isEmpty() (Java method), [1] isEmptyTranslationUnitST() (Java method) isExpressionConstant(Tree) (Java method) isExpressionIntConstant(Tree) (Java method) isExpressionNumConstant(Tree) (Java method) isExtern() (Java method) isExternal() (Java method), [1], [2] isExternalDeclared(Instruction) (Java method) isExternalDeclared(TapList) (Java method) isFalse(int) (Java method) isFGCycleHead (Java field) isFGCycleTail (Java field) isFixed() (Java method), [1], [2], [3], [4], [5] isForcedActive() (Java method) isFormalParamsLevel() (Java method) isFortran() (Java method) isFortran(int) (Java method) isFortran2003() (Java method) isFortran9x() (Java method) isFortran9x(int) (Java method) isFree(WrapperTypeSpec) (Java method) isFunction() (Java method), [1], [2] isFunctionName (Java field) isFunctionNamed(String, String) (Java method) isFunctionOrPointerToFunction(WrapperTypeSpec) (Java method) isGeneralizable() (Java method) isGlobal() (Java method) isHiddenFrom(SymbolTable) (Java method) isIdent(Tree, String, boolean) (Java method) isIdentOf(Tree, String[], boolean) (Java method) isIfExpression(Tree) (Java method) isImplicitCompleteDimension (Java field) isImplicitCompleteDimension(Tree) (Java method) isImplicitIdentityRow(int) (Java method) isImplicitZero() (Java method) isImport() (Java method) isInFactArray() (Java method) isInStdCInclude() (Java method) isInStdInclude() (Java method) isIntAtom() (Java method), [1], [2], [3], [4], [5] isIntCst(Tree, int) (Java method) isInteger() (Java method) isIntegerBase() (Java method) isInterface() (Java method), [1] isIntrinsic() (Java method), [1] isIntrinsicDeclared(Instruction) (Java method) isIntrinsicDeclared(TapList) (Java method) isIntrinsicNotElemental() (Java method), [1] isIORead(Tree) (Java method) isIOWrite(Tree) (Java method) isList() (Java method), [1], [2], [3], [4], [5] isMadeForInline (Java field) isMaskDefinition() (Java method) isMessagePassingChannel() (Java method) isMessagePassingChannelName(String) (Java method) isMessagePassingFunction(String, int) (Java method) isMetaType() (Java method) isModule() (Java method), [1] isNegativeExpression(Tree) (Java method) isNonBlocking() (Java method) isNonBlockingMPI(Tree, Unit, Block) (Java method) isNone() (Java method) isNotEmpty() (Java method) isNotNone(Tree) (Java method) isNotNoneNorEmpty(Tree) (Java method) isNotNoneNorVoid(Tree) (Java method) isNotVoid(Tree) (Java method) isNullOrEmptyAtom(Tree) (Java method) isNullOrEmptyList(Tree) (Java method) isNullOrNone(Tree) (Java method) isNullOrNoneOrEmptyList(Tree) (Java method) isNullOrNoneOrStar(Tree) (Java method) isNullOrNoneOrVoid(Tree) (Java method) isNullOrVoid(WrapperTypeSpec) (Java method) isNumericBase() (Java method) isOnceActive() (Java method) isOnDifferentiableType() (Java method) isOnlyIncrementedDiff(ActivityPattern, ZoneInfo) (Java method) isOptional() (Java method) isOptPointersIdent(Tree) (Java method) isOutside() (Java method) isOutsideFlow() (Java method) isOutsideTBD() (Java method) isPackage() (Java method) isParallelController() (Java method) isParallelController(Tree) (Java method) isParameter() (Java method) isPhantom (Java field) isPointer() (Java method), [1], [2], [3] isPointerActiveArg(ActivityPattern, int) (Java method) isPointerActiveCall(Tree, Unit, Unit, SymbolTable, Instruction, BoolVector, BoolVector, TapList) (Java method) isPointerActiveUnit(ActivityPattern) (Java method) isPointerOrArrayOfPointer(WrapperTypeSpec) (Java method) isPointToPoint() (Java method) isPredefinedModuleOrTranslationUnit() (Java method) isPrimitiveTypeCharacter() (Java method) isPrimitiveTypeFloat() (Java method) isPrimitiveTypeInteger() (Java method) isPrivate() (Java method), [1] isProbablyRealOrComplex() (Java method) isProbablyRealOrComplexBase() (Java method) isProcedure() (Java method) isProcedureWithCode() (Java method) isProtected() (Java method) isPublic() (Java method) isReal() (Java method) isRealBase() (Java method) isRealOrComplex() (Java method) isRealOrComplexBase() (Java method) isRecordType() (Java method) isReduceCall() (Java method) isRemanentLocal() (Java method) isRenamed() (Java method), [1] isResult() (Java method) isReturnVar (Java field) isReturnVarFromFunction (Java field) isScalar() (Java method), [1] isServlet() (Java method) isShared() (Java method) isSparse() (Java method) isStandard() (Java method), [1] isStar(Tree) (Java method) isStaticSchedule(Tree) (Java method) isStdCInclude(Instruction) (Java method) isStdIncludeName(String) (Java method) isString() (Java method), [1], [2], [3] isStringAtom() (Java method), [1], [2], [3], [4], [5] isStringOf(String, String[]) (Java method) isSufficientlyDefined() (Java method) isSystemPredefined() (Java method) isTarget() (Java method), [1], [2], [3] isTarget(WrapperTypeSpec) (Java method), [1], [2] isTBR(ActivityPattern, Tree) (Java method) isTBRindex(ActivityPattern, Tree) (Java method) isTBRindexOnLoopCycle(ActivityPattern, Tree) (Java method) isTBRindexOnLoopEntry(ActivityPattern, Tree) (Java method) isTBROnDiffPtr(ActivityPattern, Tree) (Java method) isTopInFile() (Java method) isTopNode() (Java method) isTotallyDeclared (Java field) isTranslationUnit() (Java method) isTranslationUnitSymbolTable() (Java method) isTreeOrSubtreeRequiredInDiff(ActivityPattern, Tree, boolean) (Java method) isTreeRequiredInDiff(ActivityPattern, Tree, boolean) (Java method) isTrueBranch (Java field) isUndefined() (Java method) isUndefinedNumeric() (Java method), [1], [2] isUnionType() (Java method) isUnitDefinitionStub() (Java method) isUnknown() (Java method) isUseAssociatedIntrinsic(FunctionDecl) (Java method) isUsed() (Java method) isUseless() (Java method) isVarDeclared(TapList) (Java method) isVarDeclaredInBlock(SymbolDecl) (Java method) isVarFunction() (Java method), [1] isVariableName (Java field) isZero(int) (Java method) isZero(Tree) (Java method) iter (Java field), [1] iterator() (Java method) IterDescriptor (Java class) IterDescriptor(int, SymbolTable, SymbolTable, Tree, Tree, String, String, Tree, int, int) (Java constructor) IterDescriptor(int, SymbolTable, Tree, Tree, String, Tree, Tree, int, int) (Java constructor) IterDescriptor(NewSymbolHolder) (Java constructor) IterDescriptor(Tree) (Java constructor)

J

JAR (Java field)

justAnIndex() (Java method)

K

K_CLASS (Java field) keepArrayTriplet(Tree) (Java method) keepEmptyDiffBlocks (Java field)

kind (Java field), [1], [2] kind() (Java method), [1], [2], [3] kindZoneNb(int) (Java method) knownSize(SymbolTable) (Java method)

L

label() (Java method) LabelHeap (Java class) LABELTYPE (Java field) LabelTypeSpec (Java class) LabelTypeSpec() (Java constructor) language (Java field) language() (Java method), [1] languageName(int) (Java method) languageRootSymbolTable(int) (Java method) languages (Java field) languages(int) (Java method) last(TapList) (Java method) lastAllocated() (Java method) lastInstr() (Java method) lastTest() (Java method) LE (Java field) le(int, boolean, int, boolean) (Java method) leftTimes(BoolVector) (Java method) length() (Java method), [1], [2], [3], [4] length(TapIntList) (Java method) length(TapList) (Java method) lengthWithCycle(TapList) (Java method) LetStruct (Java class) LetStruct(SymbolTable) (Java constructor) LibReader (Java class) LibReader(BufferedReader) (Java constructor) linearizeAllDim() (Java method) LIST_ARITY (Java field) listAllZones(TapList, boolean) (Java method)

listOfPointedTrees(BoolVector, int[], WrapperTypeSpec, ToBool, ToBool, ToBool) (Java method) listOfStatements() (Java method) listOfZonesOfValue(Tree, ToBool, Instruction) (Java method) listReversedToComments(TapList) (Java method) listST (Java field) ListTree (Java class) ListTree(Operator) (Java constructor) LOCAL (Java field) localDeclaredZoneInfo(int, int) (Java method) localize(TapList, ToBool) (Java method), [1], [2], [3], [4], [5], [6], [7], [8] localizedZones (Java field) localTBR() (Java method) localTBROnDiffPtr() (Java method) LOOP (Java field) LoopArrayAccessAnalyzer (Java class) LoopArrayAccessAnalyzer(CallGraph) (Java constructor) LoopBlock (Java class) LoopBlock(TapList) (Java constructor) loopCompleteZones (Java field) loopIndexUnusedAfterLoop (Java field) loopRunsAtLeastOnce(HeaderBlock) (Java method) LoopStruct (Java class) LoopStruct(Block) (Java constructor) lostComments() (Java method) lower (Java field) lowerLevelUnits (Java field) lowerTree() (Java method) LT (Java field) lt(int, boolean, int, boolean) (Java method)

M

MAC_CPP_COMMAND (Java field) MAIN (Java field) main(String[]) (Java method) makeAssign(RefDescriptor) (Java method) makeAssign(Unit, Tree, Tree, SymbolTable, SymbolTable, Tree, Tree, boolean, IterDescriptor) (Java method) makeDiffInitialization(Tree, SymbolTable, SymbolTable, SymbolTable, ZoneInfo, boolean, TapList, boolean) (Java method) makeExternal(String, CallGraph, int, boolean) (Java method) makeExternalOrIntrinsic(String, CallGraph, int) (Java method) makeFixedControl(int) (Java method) makeFixedControlPop(Unit, Tree, int, SymbolTable, SymbolTable, int) (Java method) makeFlowGraph(EntryBlock, TapList, ExitBlock, boolean) (Java method) makeIncrement(RefDescriptor, boolean) (Java method) makeIncrement(Unit, Tree, Tree, SymbolTable, SymbolTable, Tree, Tree, boolean, IterDescriptor) (Java method) makeInitialize() (Java method) makeInitialize(Unit, Tree, WrapperTypeSpec, WrapperTypeSpec, Tree, SymbolTable, SymbolTable, SymbolTable, Tree, boolean, IterDescriptor, ZoneInfo, boolean, TapList, boolean) (Java method) makeLocalizedTypeSpec() (Java method) makeMap3(int, int, int) (Java method) makeMap3(Unit, Block, int) (Java method) makeMap3(Unit, int) (Java method) makeMap4(int, int, int, int) (Java method) makeMessagePassingChannelName(int) (Java method) makeNewRef(SymbolTable) (Java method) makeNormDiff(Unit, Tree, Tree, Tree, SymbolTable, SymbolTable, Tree, Tree, boolean, IterDescriptor) (Java method) makePop() (Java method) makePop(Unit, Tree, SymbolTable, SymbolTable, int, ToObject) (Java method) makePopDiff(Unit, Tree, Tree, SymbolTable, SymbolTable, int) (Java method) makePush() (Java method) makePush(Unit, Tree, SymbolTable, SymbolTable, int) (Java method) makePushDiff(Unit, Tree, Tree, SymbolTable, SymbolTable, int) (Java method) makeRebase(TapList, TapList, Tree, int) (Java method) makeRef() (Java method) makeStack(Unit, String, boolean, ZoneInfo, Tree, SymbolTable, SymbolTable, boolean, int) (Java method) makeSurePrivateDeclarationsBlock(Unit) (Java method) makeTransferMatrix(int, boolean) (Java method) makeVarFunction(String, Unit) (Java method) mapDiffVarRef(ActivityPattern, TapList, SymbolTable) (Java method) mapExtendedDeclaredToVectorIndex(TapIntList, int, int[]) (Java method) mapExtendedDeclaredToVectorIndex(TapIntList, int, int[], SymbolTable, Unit) (Java method) mapExtendedDeclaredToZoneInfo(TapIntList, SymbolTable, Unit) (Java method) maps (Java field) mapSize(int[]) (Java method) mapZoneRkToPublicRk(TapIntList, int, Unit) (Java method) mapZoneRkToVectorIndex(TapIntList, int, int, int[]) (Java method) mapZoneRkToVectorIndex(TapIntList, int, int, int[], Unit) (Java method) mask (Java field) matchArgumentsTypes(WrapperTypeSpec[], Unit, Unit) (Java method) matches(Tree) (Java method) matches(Tree, Tree, TapList) (Java method) matchesCall(TypeSpec, TypeSpec[]) (Java method) MAX_DIFF_SORTS (Java field) maxColumn (Java field) maxElem(TapIntList) (Java method) maxEntryRank() (Java method) maxTrueRank(int) (Java method) maybeCheckpointed (Java field) mayBeNatural() (Java method) maybeNoCheckpointed (Java field) mayBeRecomputed() (Java method) mayBeTransformed2Do(Tree) (Java method) mayPointToRelocated(Tree, boolean, Instruction, SymbolTable, boolean) (Java method) mayProtectAccesses (Java field) MemoryMap (Java class) MemoryMap() (Java constructor) mergeCases(FGArrow) (Java method) mergeDiffInstructions (Java field) mergeUseDeclTrees(Tree, Tree, boolean) (Java method) mergeWithSuccessor(Block) (Java method) message() (Java method) MESSAGE_PASSING_CHANNEL (Java field) messageRef(TapList, boolean, int) (Java method), [1], [2] messages (Java field) METATYPE (Java field)

MetaTypeSpec (Java class) MetaTypeSpec(String) (Java constructor) METHOD (Java field) middleNormalBlock() (Java method) migrateToCopySymbolTable(SymbolTable) (Java method) minElem(TapIntList) (Java method) minus(BoolVector) (Java method) minus(TapIntList, TapIntList) (Java method) minusProtectedExpr(Tree) (Java method) minusTree(Tree) (Java method) MIXED (Java field) mixedLangInfos (Java field) mixedLanguage(FunctionDecl) (Java method) MixedLanguageInfos (Java class) mixedLanguageInfos() (Java method) MixedLanguageInfos(int, int, String, String, String) (Java constructor) MOD (Java field) modeIsAdjoint() (Java method) modeIsNoDiff() (Java method) modeIsOverloading() (Java method) modeIsTangent() (Java method) modifiedBaseTypeSpec() (Java method), [1], [2], [3] MODIFIEDTYPE (Java field) ModifiedTypeSpec (Java class) ModifiedTypeSpec(WrapperTypeSpec, ModifiedTypeSpec) (Java constructor) ModifiedTypeSpec(WrapperTypeSpec, Tree, SymbolTable) (Java constructor) modifiers (Java field), [1] modifyAccessTreeForUniqueAccess(int, Tree, Block) (Java method) modifyRootName(Tree, String, String) (Java method) MODULE (Java field) mouseClicked(MouseEvent) (Java method) mouseDragged(MouseEvent) (Java method) mouseEntered(MouseEvent) (Java method) mouseExited(MouseEvent) (Java method) mouseMoved(MouseEvent) (Java method) mousePressed(MouseEvent) (Java method) mouseReleased(MouseEvent) (Java method) move(int, int) (Java method) move(int, int, int) (Java method) moveSymbolDeclListUpRec(TapList, SymbolTable) (Java method) MPIcallInfo (Java class) MPIRecvCalls (Java field) MSG_ALWAYS (Java field) MSG_DEFAULT (Java field) MSG_ERROR (Java field) MSG_SEVERE (Java field) MSG_TRACE (Java field) MSG_WARN (Java field) msgLevel() (Java method) mulProtectedExprs(Tree, TypeSpec, Tree, TypeSpec) (Java method) multiDir (Java field) multiDirDiffMode (Java field) multiDirDimension (Java field) multiDirDimensionMax (Java field), [1] multiDirIterDescriptor (Java field) multiDirMaxIterDescriptor (Java field) multiDirMode (Java field) multiFuncSuffix (Java field) multiple (Java field) MULTITHREAD_REGION (Java field) mulTree(Tree, Tree) (Java method) mustAddNbDirsDim(WrapperTypeSpec) (Java method) mustAdjoint (Java field) mustAdjoint() (Java method) mustBeCreated() (Java method) mustContext (Java field) mustContext() (Java method) mustDifferentiateJoint() (Java method) mustDifferentiateSplit() (Java method) mustHaveADiff(ADActivityAnalyzer) (Java method) mustTangent (Java field) mustTangent() (Java method) MyActionListener (Java class)

N

N_NPZ (Java field) name (Java field), [1], [2] name() (Java method), [1], [2], [3] namedFieldDecl(String) (Java method) namedFieldOffset(String) (Java method) namedFieldRank(String) (Java method) namedFieldType(String) (Java method) NAMEDTYPE (Java field) NamedTypeSpec (Java class) NamedTypeSpec(String) (Java constructor) nameListList (Java field) namesOfPublicZones(BoolVector, Unit) (Java method) NAMESPACE (Java field) NameSpaceDecl (Java class) NameSpaceDecl(String, SymbolTable) (Java constructor) nameSpaceName (Java field) NameSpaceStruct (Java class) NameSpaceStruct(Block) (Java constructor) nameTree (Java field) NATURAL_LOOP (Java field) naturalArrowsAfterSwitch (Java field) naturalFlow (Java field) naturalNext (Java field) nbArrows (Java field) nbBlocks (Java field) nbDeps (Java field) nbdirsmaxString (Java field) nbdirsmaxTree (Java field) nbUnits() (Java method) nCols (Java field) nDZ (Java field) NE (Java field) needsADiffType(TapList) (Java method), [1], [2], [3], [4], [5] nestedIn(SymbolTable) (Java method) nestedIntIndexSymbolHolders (Java field) nestedLevelType() (Java method), [1], [2], [3], [4], [5] nestingDepth() (Java method) NewBlockGraph (Java class) NewBlockGraph(DifferentiationEnv, SymbolTable, int) (Java constructor) NewBlockGraphArrow (Java class) NewBlockGraphArrow(NewBlockGraphNode, NewBlockGraphNode) (Java constructor) NewBlockGraphNode (Java class) NewBlockGraphNode(int, Tree, boolean, Instruction, InstructionMask) (Java constructor) newDeclarationsBlock(Block) (Java method) newFunctionDecl() (Java method) newLine() (Java method), [1], [2], [3] newLine(int) (Java method) newR(int) (Java method) newR(T) (Java method) newSHdisambiguator (Java field) newSolvedVariableDecl (Java field) newSplitCopy(SymbolTable) (Java method)

newSplitNoColonCopy(SymbolTable) (Java method) NewSymbolHolder (Java class) NewSymbolHolder(String) (Java constructor) NewSymbolHolder(String, int) (Java constructor) NewSymbolHolder(String, Unit, WrapperTypeSpec, int) (Java constructor) newSymbolHolders (Java field) newTypeDecl() (Java method) newVariableDecl (Java field) newVariableDecl() (Java method) NEXT (Java field) NEXT_TREE (Java field) nextCodeTag (Java field) nextIntZone (Java field) nextMessageTag (Java field) nextNewLabel (Java field) nextPtrZone (Java field) nextRealZone (Java field) nextSourceMsgTag (Java field) nextSourceTag (Java field) nextZone (Java field) NO_DEBUG (Java field) NO_POSITION (Java field) NO_TEST (Java field) NOACT (Java field), [1] NOCHECKPOINT (Java field) noComment (Java field) Node (Java class) Node() (Java constructor) nodes (Java field), [1] NODIFF (Java field) NODIFFEND (Java field) NODIFFSTART (Java field) noisize (Java field) noisize77 (Java field) NOMATCH (Java field) nonFlowInstructions (Java field) nonPrivForwardDeclarations (Java field) normalizePath(String) (Java method) not() (Java method), [1] NOT_A_FORMAL_ARG (Java field) notImplicitRows() (Java method) NP_CLASS (Java field) nreverse(TapList) (Java method) nRows (Java field) nSEZ (Java field) nth(TapList, int) (Java method) nTZ (Java field) NULL (Java field) numberOfOnes() (Java method) numberOfOnes(int) (Java method) numberPushPops (Java field) numberSymbolTables() (Java method) numRebase (Java field)

O

obj() (Java method) offset (Java field) offsetLength (Java field) offsetRef(Tree, WrapperTypeSpec, int) (Java method) oldContext (Java field) OMP_ADJ (Java field) OMP_TGT (Java field) OmpClauseAnalyzer (Java class) ompClauseAnalyzer (Java field) ompClauseAnalyzer() (Java method) OmpClauseAnalyzer(CallGraph) (Java constructor) oneFalse(TapList) (Java method) oneIsArrayTriplet(Tree) (Java method) oneNonSingleton(TapList) (Java method) oneSymbolDeclIsActive(TapList) (Java method) oneTrue(TapList) (Java method) oneTrueInHead(TapList) (Java method) oneZoneIsMultiple(TapIntList) (Java method) opCode() (Java method) open() (Java method) OPENBRACKET (Java field) openGroup() (Java method) openList() (Java method) OPENPARENTH (Java field) Operator (Java class) operator() (Java method) operator(String) (Java method) Operator(String, int, int, int[]) (Java constructor) operators (Java field) opName() (Java method) OptionPanel (Java class) OptionPanel() (Java constructor) optionsString (Java field)

optionsString() (Java method) or(BoolVector) (Java method) orderedFiles() (Java method) orig2copiedBlocks (Java field) origCallGraph() (Java method), [1] ORIGCOPY (Java field) origCycleLabel() (Java method) origin (Java field), [1] origin() (Java method), [1] origKeyTreeList (Java field) origLabel() (Java method) origPattern (Java field) origPublicSTDeclarationBlock (Java field) origUnit (Java field) origUnit() (Java method) orInfoPRZVTrees(BoolVector, TapList) (Java method) OTHER (Java field) otherImportedModules (Java field) otherName() (Java method) otherReturnVar() (Java method) OUTPUT (Java field) outputExtension(int) (Java method) outputLanguage (Java field) outputLanguage() (Java method) OutputLanguagePanel (Java class) OutputLanguagePanel() (Java constructor) OutputPanel (Java class) OutputPanel() (Java constructor) outputStreamStack (Java field) overwriteDeps(TapIntList, BoolVector, boolean) (Java method) overwriteDeps(TapIntList, int, BoolVector, boolean) (Java method) overwritesUsed (Java field) ownerSymbolDecl (Java field)

P

parallelControls (Java field) ParallelControlStruct (Java class) ParallelControlStruct(Block) (Java constructor) paramElemPublicInfo(int) (Java method) paramElemsNb() (Java method) paramElemZoneInfo(int) (Java method) PARAMETER (Java field) parametersOrModuleNameTree (Java field) paramHasOnlyLocalDiff(ActivityPattern, Tree, VariableDecl) (Java method) paramVars (Java field) parent() (Java method) parse(String[], String[], String) (Java method) parseFiles(boolean, String, String[], CallGraph, TapList, int, boolean) (Java method) parseIdentifier(String) (Java method) Parser (Java class) parserError(String) (Java method), [1] parserFileSeparator (Java field) parserFileSeparator() (Java method) passesByValue(int) (Java method) passesByValue(int, int) (Java method) passesByValue(Unit) (Java method) passesByValue(Unit, int) (Java method) pathFromPointerAccess(Tree) (Java method) patternsCalledByPattern(Unit, ActivityPattern) (Java method) peelArrayDimsAroundComposite(WrapperTypeSpec) (Java method) peelConstModifier(Tree) (Java method) peelDimensionsTo(TypeSpec, TypeSpec, TapList) (Java method) peelInOutConstValueModifier(Tree) (Java method) peelModifier(Tree, String) (Java method) peelPointer() (Java method), [1], [2], [3] peelSizeModifier(WrapperTypeSpec, ToObject, SymbolTable) (Java method) peelSizeModifiersTo(TypeSpec, TypeSpec, ToObject, ToObject, boolean) (Java method) peelWrapperAndModified(TypeSpec) (Java method) peelWrapperAndModifiedTo(TypeSpec, TypeSpec) (Java method) peelWrapperTo(TypeSpec, TypeSpec) (Java method) Phylum (Java class) Phylum(String, int, int[]) (Java constructor) placdl(int) (Java method) placdl(T) (Java method) placeDebugADTests(Unit, Tree, BoolVector, int[], int, SymbolTable, int, String, Instruction, Tree, Tree) (Java method) placeSave(String, VariableDecl, int, SymbolTable) (Java method) PLAIN (Java field) PLAIN_BLOCK (Java field) PLAIN_GROUP (Java field) PlainStruct (Java class) PlainStruct(Block) (Java constructor) plainTrees (Java field) POINTER_SIZE (Java field) PointerAnalyzer (Java class) pointerAnalyzer (Java field) pointerAnalyzer() (Java method) pointerComments() (Java method) pointerDestsChanges (Java field) pointerDestType() (Java method) pointerEffect (Java field) pointerInfosIn (Java field) pointerIsActiveHere(Tree, BoolVector, BoolVector, BoolVector, BoolVector) (Java method) pointerSize (Java field) pointerToArrayTypeSpec() (Java method), [1] POINTERTYPE (Java field) PointerTypeSpec (Java class) PointerTypeSpec(WrapperTypeSpec, ArrayDim) (Java constructor) POP (Java field) popCurDiffSorts() (Java method) popCurDiffUnit() (Java method) popCurDiffVectorMap() (Java method) popCurSymbolTable() (Java method) popCurUnitEtc() (Java method) popCurVectorMap() (Java method) popDiffContext() (Java method) popOutputStream() (Java method) popRelatedUnit() (Java method) popTreeReader() (Java method) position (Java field) position() (Java method), [1] position(Tree) (Java method) PositionAndMessage (Java class) PositionAndMessage(int, String, Tree) (Java constructor) PositionAndMessage(PositionAndMessage) (Java constructor) postComments (Java field), [1] postCommentsBlock (Java field), [1] postDecompile(Tree, int) (Java method) postDominator (Java field) posX (Java field) posY (Java field) pourCommonInterval(MemoryMap, MemoryMap, String, int, int, boolean, WrapperTypeSpec) (Java method) pourMemoryMap(Unit) (Java method) powerTree(Tree, Tree) (Java method) preciseDefaultLengthTree(Unit, SymbolTable) (Java method) preciseDimension(ArrayDim, ArrayDim, SymbolTable) (Java method) preciseDimensions(TypeSpec, TapList, SymbolTable) (Java method), [1], [2], [3] preciseDimensions(WrapperTypeSpec, WrapperTypeSpec, TapList, SymbolTable) (Java method) preciseLengthTree(Tree) (Java method) preciseSizeReferences(Tree, int) (Java method) precisionSize() (Java method), [1], [2], [3], [4] preComments (Java field), [1], [2] preCommentsBlock (Java field), [1], [2] predecessor (Java field) preDecompile(Tree, int) (Java method) preGenerateBody(TapList, TapList, TapList, TapList, boolean) (Java method)

preGenerateForwardTree() (Java method) preGenerateTree(TapList, TapList, TapList, TapList, boolean) (Java method), [1], [2], [3], [4], [5], [6], [7], [8] preGenerateTreeChained(TapList, TapList, TapList, TapList, TapList, boolean) (Java method) prepareAnalyses(TapList) (Java method) prepareDeclarationInstr(Unit) (Java method) prepareForAssignOrNormDiff(RefDescriptor, Unit, TapList, boolean) (Java method) prepareForInitialize(Unit, TapList, boolean) (Java method) prepareForStack(Unit, int, TapList, boolean) (Java method) preparePrivateClause(Block, SymbolTable, boolean, boolean) (Java method) prepareRestoreOperations(RefDescriptor, RefDescriptor, int, SymbolTable, SymbolTable) (Java method) prepareStorageForUnit(Unit) (Java method) prepareSumReductionClause(Block) (Java method) prependNoDups(TapList, TapList) (Java method) preprocess() (Java method), [1] preProcess(String[]) (Java method) preprocessFileSuffix (Java field) PRIMITIVETYPE (Java field) PrimitiveTypeSpec (Java class) PrimitiveTypeSpec(String) (Java constructor) primR (Java field) primRecv (Java field), [1] primW (Java field) print(String) (Java method) print(String, int, String) (Java method) Printer (Java class) printer (Java field) Printer(OutputStream) (Java constructor) Printer(String) (Java constructor) println() (Java method) println(String) (Java method) printlnMappedBoolVector(String, BoolVector, int[], String) (Java method) printlnMappedBoolVectorWithDiffPtr(String, BoolVector, int[], String, BoolVector, int[], String) (Java method) printlnMappedBoolVectorWithDiffPtr(String, TapPair, int[], String, int[], String) (Java method) printlnOnTrace() (Java method) printlnOnTrace(int) (Java method) printlnOnTrace(int, String) (Java method) printlnOnTrace(String) (Java method) printOnDump(String) (Java method) printOnTrace(int, String) (Java method) printOnTrace(String) (Java method) printString(String) (Java method) printText(String, String) (Java method), [1], [2], [3] privacy (Java field) privateForwardDeclarations (Java field) privateSymbolTable() (Java method) probableName (Java field) probableName() (Java method) PROC (Java field) ProcedureCallDifferentiator (Java class) procedureCallDifferentiator (Java field) ProcedureCallDifferentiator(DifferentiationEnv) (Java constructor) profile (Java field) propagateDataToCallee(BoolVector, int[], Tree, Tree[], TapList, TapIntList, Instruction, CallArrow, boolean, int) (Java method) propagateDataToCaller(BoolVector, Tree, Tree[], int, BoolVector, int[], TapList, Instruction, CallArrow, boolean, boolean, int) (Java method) propagateDataToCallSite(BoolVector, Tree, Tree[], int[], Instruction, CallArrow, boolean, boolean, int) (Java method) propagateEntryDataBwdToCaller(BoolMatrix, BoolMatrix, int[], int, int, CallArrow, BoolVector) (Java method) propagateEntryDataBwdToCaller(BoolVector, BoolVector, int[], Instruction, CallArrow, Tree[], int) (Java method) propagateEntryDataFwdToCallee(BoolMatrix, int[], TapList[], BoolVector, CallArrow, Tree[], int, boolean) (Java method) propagateEntryDataFwdToCallee(BoolVector, int[], TapList[], BoolVector, CallArrow, Tree[], int, boolean) (Java method) propagateExitDataBwdToCallee(BoolMatrix, int[], int, TapList, Tree[], CallArrow, boolean, boolean, BoolVector) (Java method) propagateExitDataBwdToCallee(BoolVector, int[], TapList, TapIntList, CallArrow, Tree[], int, boolean, BoolVector, boolean, boolean) (Java method) propagateExitDataFwdToCaller(BoolMatrix, BoolMatrix, int[], BoolVector, CallArrow, Tree[], int) (Java method) propagateExitDataFwdToCaller(BoolVector, BoolVector, int[], Instruction, CallArrow, Tree[], int) (Java method) propagateExitDataFwdToCallerResult(BoolVector, CallArrow) (Java method) propagateNaturalFlow() (Java method), [1], [2], [3], [4], [5], [6], [7], [8] propagateNaturalFlowChained(TapList) (Java method) propagateNaturalNext(Block) (Java method), [1], [2], [3], [4], [5], [6], [7], [8] propagateNaturalNextChained(TapList, Block) (Java method) propagateUnitDataInside(BoolVector, int, int[]) (Java method) propagateUnitDataInside(BoolVector, int, int[], Unit) (Java method) propagateUnitDataOutside(BoolMatrix, int) (Java method) propagateUnitDataOutside(BoolVector, int, int[], boolean, Unit) (Java method) propagateValuesBackwardThroughBlock() (Java method), [1], [2], [3], [4] propagateValuesBackwardThroughExpression() (Java method) propagateValuesForwardThroughBlock() (Java method), [1], [2], [3], [4], [5], [6] propagateValuesForwardThroughExpression() (Java method) propagateValuesStaticallyThroughBlock() (Java method) propagateValuesStaticallyThroughExpression() (Java method), [1] protectedSymbolTable() (Java method) PTRKIND (Java field) ptrZoneInfos (Java field) ptrZoneNb (Java field) PublicInfo (Java class) publicName() (Java method) publicPrivateDefault (Java field) publicRankOfResult() (Java method) publicSymbolTable() (Java method) PUSH (Java field) pushCurDiffSorts(int, int) (Java method) pushCurDiffUnit(Unit) (Java method) pushCurDiffVectorMap(int[]) (Java method) pushCurSymbolTable(SymbolTable) (Java method) pushCurUnitEtc(Unit) (Java method) pushCurVectorMap(int[]) (Java method) pushDiffContext(int) (Java method) pushOutputStream(OutputStream) (Java method) pushPopNumber (Java field) pushRelatedUnit(Unit) (Java method) pushTreeReader() (Java method) putBackSharingZones(BoolVector, BoolVector, Unit) (Java method)

Q

quickUnion(TapIntList, TapIntList) (Java method)

R

rank (Java field), [1], [2], [3] rank() (Java method), [1] rank(Object) (Java method) rankInParent() (Java method) rankInRef (Java field) ranks(int) (Java method) rankString(String) (Java method) rassq(VALUETYPE, TapList) (Java method) rassqString(String, TapList) (Java method) reachable (Java field), [1] READ (Java field), [1] reader (Java field) readNextToken() (Java method) readOperator() (Java method) readPrefixTree() (Java method) readString() (Java method) readTree() (Java method) REAL_SIZE (Java field) realIsInt(String, TapIntList) (Java method) REALKIND (Java field) realSize (Java field) realToComplex(TapList, WrapperTypeSpec) (Java method), [1], [2], [3], [4], [5] realTypeSpec (Java field) realZoneInfos (Java field) realZoneNb (Java field) rebased (Java field) rebasedDiff (Java field) rebuildIdentifier(TapList) (Java method) reBuildNameEqArgs(Tree, Tree) (Java method) rebuildTree() (Java method) receivedExprFromChannel() (Java method) receives(TypeSpec, TypeSpec, TypeSpec) (Java method) receivesNoInferenceNoVector(TypeSpec) (Java method) receivesNoVector(TypeSpec, TypeSpec, TypeSpec) (Java method) receivesVectorNeglectSizes(TypeSpec) (Java method) recomps() (Java method) recomputeDependsOn(SymbolTable) (Java method), [1] recomputeText() (Java method) RECORDTYPE (Java field) redirectDestination(Block) (Java method) redirectDestination(Block, boolean) (Java method) redirectDestination(NewBlockGraphNode) (Java method) redirectDestination(Unit) (Java method) redirectOrigin(Block) (Java method) redirectOrigin(NewBlockGraphNode) (Java method) redirectOrigin(Unit) (Java method) reducSumProtectedExpr(Tree, Tree) (Java method) refArrayTree (Java field) RefDescriptor (Java class) RefDescriptor(Tree, Tree, SymbolTable, SymbolTable, SymbolTable, Tree, boolean, IterDescriptor, Unit) (Java constructor) RefDescriptor(Tree, WrapperTypeSpec, Tree, SymbolTable, SymbolTable, SymbolTable, Tree, boolean, IterDescriptor, Unit) (Java constructor) RefDescriptor(Tree, WrapperTypeSpec, WrapperTypeSpec, Tree, SymbolTable, SymbolTable, SymbolTable, Tree, boolean, IterDescriptor, Unit) (Java constructor) RefDescriptor(ZoneInfo, Tree, SymbolTable, SymbolTable, SymbolTable, Tree, boolean, IterDescriptor, Unit) (Java constructor) referenceIsTotal(boolean, TapList) (Java method) REFERENCETYPE (Java field) ReferenceTypeSpec (Java class) ReferenceTypeSpec(TypeSpec) (Java constructor) refineADMM (Java field) refNDims (Java field) refOffset(Tree) (Java method) refQuality (Java field) refTree() (Java method) registerCallingActivityPattern(ActivityPattern) (Java method) registerMessagePassingChannel(CallGraph) (Java method) reinitialize() (Java method) relatedArrow (Java field) relatedArrow() (Java method) relatedLanguage (Java field) relatedLanguage() (Java method) relatedLanguageIsC() (Java method) relatedLanguageIsCPLUSPLUS() (Java method) relatedLanguageIsFortran() (Java method) relatedLanguageIsFortran77() (Java method) relatedLanguageIsFortran9x() (Java method) relatedUnit (Java field) relatedUnit() (Java method) relatedUnits (Java field) relocated (Java field) relocatedDiff (Java field) reMergeAndAnnotate(TapList, ActivityPattern) (Java method) removeAndShunt() (Java method) removeAnnotation(String) (Java method) removeAnnotationForActivityPattern(Tree, ActivityPattern, String) (Java method) removeChild(int) (Java method), [1] removeDeadControl (Java field)

removeDeadControl() (Java method) removeDeadPrimal (Java field) removeDeadPrimal() (Java method) removeDecl(String, int, boolean) (Java method) removeExternalInstr(SymbolDecl) (Java method) removeInfoOnTopLevel(TapList) (Java method) removeInfoOnTopLevel(TapList, Object) (Java method) removeInstr(Instruction) (Java method) removeInterfaceDecl(String, int, boolean) (Java method) removeLast(TapList) (Java method) removePhantomPackages(TapList) (Java method) removeSizeModifiers(Tree[]) (Java method) removeSourceCodeAnnot(Tree) (Java method) removeTreeDeclOf(String, Tree) (Java method) removeUsedModuleFromInterfaceDecl(Tree, String) (Java method) renamedFromSymbolDecl (Java field) reorderBody() (Java method), [1], [2], [3], [4], [5], [6], [7], [8] reorderBodyChained(TapList) (Java method) replace(TapList, T, T) (Java method) replaceAllCallName(Tree, String, String, Tree, SymbolTable) (Java method) replaceAllIdent(Tree, Tree, Tree) (Java method) replaceAllIdentsNamed(Tree, String, String) (Java method) replaceAllocateInExprToInitialize(Tree) (Java method) replaceAllVariables(SymbolTable, SymbolTable) (Java method) replaceDiffSymbolHolder(NewSymbolHolder, NewSymbolHolder) (Java method) replaceExtraInfoValue(TapList, String, String) (Java method) replaceIdentStringOccurences(Tree, String, Tree) (Java method) replaceInAllocationPoints(Tree, Tree) (Java method) replaceInFlowGraph(Block) (Java method) replaceIntsWithValueInts(TapList, int[], int) (Java method) replaceMPIconstantsIfPossible(Tree) (Java method) replaceTree(Tree, Tree) (Java method) replaceUsedModule(Tree, String, Tree) (Java method) ReqExplicit (Java class) reqExplicitAnalyzer (Java field) reqExplicitAnalyzer() (Java method) reqXEffects() (Java method) reqXEffectsAdded() (Java method) reqXMark() (Java method) reqXs() (Java method) reset() (Java method), [1], [2] resetActiveTmpZones() (Java method) resetAssignFromInitDecl(Tree) (Java method) resetInIncludeFile() (Java method) resetLivenessInfo(TapList) (Java method) resetPreviousFunctionDeclAndNewUnit() (Java method) resetPushPopNumber() (Java method) resetRelatedUnit() (Java method) resetReturnFromAssign(Tree, Tree) (Java method) resetSeenSymbolTables() (Java method) resetTargetNameAndZone() (Java method), [1] resize(int) (Java method) resolveSizeModifier(SymbolTable) (Java method) RESULT (Java field) resultRK (Java field) retrieve(Block) (Java method) retrieve(Unit) (Java method) RetryNewServlet (Java class) RetryServlet (Java class) returnedVariable (Java field) returnType (Java field) returnTypeSpec() (Java method) reTypeThread(int, int) (Java method) reuseNewSymbolHolder(String, WrapperTypeSpec, TapList) (Java method) reverse(TapIntList) (Java method) reverse(TapList) (Java method) reverseArrayComponentOrder(Tree) (Java method) reversedExprAccess(Tree) (Java method) reversedExprAccessFromPointerAccess(Tree, boolean) (Java method) right() (Java method) rootAccessType (Java field) rootDirectoryPath (Java field) rootUnits (Java field) rows (Java field) run() (Java method), [1] run(CallGraph, TapList, String[][]) (Java method) run(TapList) (Java method), [1], [2], [3], [4], [5], [6] runAnalysis(CallGraph) (Java method) runAnalysis(CallGraph, TapList) (Java method), [1], [2], [3], [4], [5], [6] runAnalysis(CallGraph, TapList, int) (Java method) runBottomUpAnalysis(TapList) (Java method) runBottomUpTopDownAnalysis(TapList) (Java method) runSpecialCycleAnalysis(Block) (Java method) runTapenade() (Java method) runTopDownAnalysis(TapList) (Java method)

S

sameFinalIncludeFile(String, String) (Java method) sameLanguage(int) (Java method) sameLanguageFamily(int, int) (Java method) sameNSH(Tree, Tree) (Java method) sameTypes(WrapperTypeSpec, WrapperTypeSpec[]) (Java method), [1] SAtomTree (Java class) SAtomTree(Operator) (Java constructor) saveAllMessagesAsHTML(TapList, String, String, String, String, boolean, String) (Java method) saveAllMessagesAsText(TapList, String) (Java method) saveCommonName (Java field) saveFrontierActivity(TapList, TapList, ActivityPattern) (Java method) saveList (Java field) scalarTypeSpec(boolean, SymbolTable) (Java method) SE_CLASS (Java field) second (Java field), [1] seemsInteger(Tree) (Java method) seeNextToken() (Java method) seenSymbolTables (Java field) seeOperator() (Java method) seesAsShared(String) (Java method) selectedIndex() (Java method) sentExprToChannel() (Java method) set(boolean) (Java method) set(int) (Java method) set(int, boolean) (Java method) set(int, int, boolean) (Java method) set(TapIntList, boolean) (Java method) SET_VARIABLE (Java field) setActive() (Java method), [1] setActive(boolean) (Java method) setActiveMark(String) (Java method) setActivities(BlockStorage) (Java method) setADActivityAnalyzer(ADActivityAnalyzer) (Java method) setAdditionalDuplicatedDeclaredZoneInfos(TapList, int) (Java method) setAdjoint(ActivityPattern, Unit) (Java method) setADTBRAnalyzer(ADTBRAnalyzer) (Java method) setAdTBRTopDownContext(BoolVector) (Java method) setAdTBRTopDownContextOnDiffPtr(BoolVector) (Java method) setAll(boolean) (Java method) setAllMessagePassingChannels(TapList) (Java method) setAllocateGlobals(boolean) (Java method) setAllocDealloc() (Java method) setAnnotatedActive(ActivityPattern, Tree) (Java method) setAnnotatedReqX(ActivityPattern, Tree) (Java method) setAnnotation(String, T) (Java method) setAnnotationForActivityPattern(Tree, ActivityPattern, String, Object) (Java method) setAsConstantVariable(WrapperTypeSpec, TapList, Tree) (Java method) setAssGotoInfoDone(TapList) (Java method) setAssocAddressDiffTypesUnit(Unit) (Java method) setAssociationByAddress(boolean) (Java method) setAsType(WrapperTypeSpec, TapList) (Java method) setAsVariable(WrapperTypeSpec, TapList) (Java method) setAvlXEffectsAdded(BoolVector) (Java method) setAvlXEffectsVisible(BoolVector) (Java method) setAvlXs(BlockStorage) (Java method) setBackFlow(TapList) (Java method) setBackground(Component) (Java method) setBasisSymbolTable(SymbolTable) (Java method) setBindCFortranCFunctions(TapList) (Java method) setBindFortranCType(TapList) (Java method) setBitfieldTree(Tree) (Java method) setCallActivity(BoolVector) (Java method) setCalledFromOtherLanguage() (Java method) setCallUsefulness(BoolVector) (Java method) setCaseDependent(boolean) (Java method) setChild(Tree, int) (Java method), [1], [2] setClass() (Java method) setClassTypeSpec(ClassTypeSpec) (Java method) setCommonInstr(boolean) (Java method) setCommonName(String) (Java method) setCommonVariableDecl(VariableDecl) (Java method) setCommonWithArrayDeclaratorInstr(boolean) (Java method) setCompanionVarDescriptor(RefDescriptor) (Java method) setConformingDimension(WrapperTypeSpec, WrapperTypeSpec, WrapperTypeSpec, Tree) (Java method) setConstant() (Java method) setConstantKind() (Java method) setConstructor() (Java method) setContain(boolean) (Java method) setContext(boolean) (Java method) setControlStruct(ControlStruct) (Java method) setControlTree(Tree) (Java method) setCopy(BoolVector) (Java method) setCopy(BoolVector, int) (Java method) setcPlusPlusRootSymbolTable(SymbolTable) (Java method) setcRootSymbolTable(SymbolTable) (Java method) setCurActivity(ActivityPattern) (Java method) setCurBlock(Block) (Java method) setCurBlockEtc(Block) (Java method), [1], [2], [3], [4], [5], [6], [7] setCurBwdSymbolTable(SymbolTable) (Java method) setCurDiffSorts(int, int) (Java method) setCurDiffUnit(Unit) (Java method) setCurDiffVectorMap(int[]) (Java method) setCurFwdDiffUnit(Unit) (Java method) setCurFwdSymbolTable(SymbolTable) (Java method) setCurInstruction(Instruction) (Java method) setCurOutputStream(OutputStream) (Java method) setCurPtrVectorMap(int[]) (Java method) setCurrentDirectory(String) (Java method) setCurrentIncludeInstruction(Instruction) (Java method) setCurrentParsedFile(String) (Java method) setCurrentTranslationUnitSymbolTable(SymbolTable) (Java method) setCurSymbolTable(SymbolTable) (Java method) setCurUnitActivitiesLivenessesAndOverwrites(ActivityPattern, boolean) (Java method) setCurUnitActivity(ActivityPattern) (Java method), [1] setCurUnitEtc(Unit) (Java method), [1], [2], [3], [4], [5], [6], [7] setCurVectorMap(int[]) (Java method) setDebugActivity(boolean) (Java method) setDebugADMM(boolean) (Java method) setDebugAdMode(int) (Java method) setDeclared(int, int[], boolean) (Java method) setDeclared(TapIntList, int[], boolean) (Java method) setDeclaredZoneInfos(ZoneInfo[], int) (Java method) setDeleted() (Java method) setDependsOn(TapList) (Java method) setDepsAnalyzer(DepsAnalyzer) (Java method) setDepsPathNames(TapList) (Java method) setDepsPathZones(TapList) (Java method) setDepsZones(TapIntList) (Java method) setDescription(String) (Java method) setDestructor() (Java method) setDiff(Unit) (Java method) setDiffCallGraph(CallGraph) (Java method) setDiffCallGraphAndRootUnits(CallGraph, TapList) (Java method) setDiffKind(int) (Java method) setDiffLivenessAnalyzer(DiffLivenessAnalyzer) (Java method) setDiffLivenesses(BlockStorage) (Java method) setDiffLivenessesCkp(BlockStorage) (Java method) setDiffLivenessTopDownContext(DiffLivenessAnalyzer.Context) (Java method) setDiffOverwrites(BlockStorage) (Java method) setDiffOverwritesCkp(BlockStorage) (Java method) setDiffPattern(DiffPattern) (Java method) setDiffSymbolHolder(int, ActivityPattern, NewSymbolHolder, int) (Java method) setDimensions(ArrayDim[]) (Java method) setDistribVersion(boolean) (Java method) setDoActivity(boolean) (Java method) setDominatorArrows(BoolVector) (Java method) setDoMPI(boolean) (Java method) setDontDiff(boolean) (Java method) setDoOpenMP(boolean) (Java method) setDoRecompute(boolean) (Java method) setDoTBR(boolean) (Java method) setDoUsefulness(boolean) (Java method) setDuplicableUnitNames(TapList) (Java method) setElementType(WrapperTypeSpec) (Java method) setEmptyCumulAndCycleValues() (Java method), [1], [2], [3], [4], [5], [6] setEnclosingBlock(Block) (Java method) setEnclosingBlockProtected(Block) (Java method) setEnclosingLoop(LoopBlock) (Java method) setEnclosingLoopBLocks(TapList) (Java method) setEndOffset(int) (Java method) setEntryAvlX(BoolVector) (Java method) setEntryBlock(EntryBlock) (Java method) setEntryDiffLivenessesCkp(BoolVector) (Java method) setEntryDiffLivenessesCkpOnDiffPtr(BoolVector) (Java method) setEntryDiffOverwritesCkp(BoolVector) (Java method) setEntryDiffOverwritesCkpOnDiffPtr(BoolVector) (Java method) setEntryReqX(BoolVector) (Java method) setEquivalence(VariableDecl, int, VariableDecl, int, SymbolTable, SymbolTable) (Java method) setExitActivity(BoolVector) (Java method) setExitAvlX(BoolVector) (Java method) setExitBlock(ExitBlock) (Java method) setExitDiffLivenesses(BoolVector) (Java method) setExitDiffLivenessesOnDiffPtr(BoolVector) (Java method) setExitDiffOverwrites(BoolVector) (Java method) setExitDiffOverwritesOnDiffPtr(BoolVector) (Java method) setExitReqX(BoolVector) (Java method) setExitUsefulness(BoolVector) (Java method) setExplicitIdentity() (Java method) setExplicitIdentityRow(int) (Java method) setExplicitZero() (Java method) setExplicitZeroRow(int) (Java method) setExtendedDeclared(BoolVector, int[], int, int, boolean) (Java method) setExtendedDeclared(BoolVector, int[], int, int, boolean, SymbolTable) (Java method) setExtendedDeclared(BoolVector, int[], int, TapIntList, boolean) (Java method) setExtendedDeclared(BoolVector, int[], int, TapIntList, boolean, SymbolTable) (Java method) setExternal() (Java method) setExternalInstr(boolean) (Java method) setExternalSymbolTable(SymbolTable) (Java method) setExtraInfo(TapList) (Java method), [1] setFalse() (Java method) setFgPhase(int) (Java method) setFgSubPhase(int) (Java method) setFieldRank(Tree, int) (Java method) setFinalGotoRank(int) (Java method) setFlow(TapList) (Java method) setFont(Component) (Java method) setForcedActive(boolean) (Java method) setFortranRootSymbolTable(SymbolTable) (Java method) setForwardDeclaration(Instruction) (Java method) setFreeDeclaredZone(int, int) (Java method) setFromImplicitType(TypeSpec) (Java method) setFromInclude(Instruction) (Java method), [1], [2] setFromIncludeCopy(Instruction, boolean) (Java method) setFunctionTypeSpec(FunctionTypeSpec) (Java method) setGlobalRootSymbolTable(SymbolTable) (Java method) setHasArrayNotation() (Java method) setHasUndefinedSize(boolean) (Java method), [1], [2] setHintArrayTreeForCallSize(Tree) (Java method), [1], [2] setHintRootTree(Tree) (Java method) setIdentity() (Java method) setIdentityRow(int) (Java method) setImplicitLetters(char, char, WrapperTypeSpec) (Java method) setImport(boolean) (Java method) setIncludeDirList(TapList) (Java method) setIncludeOfDiffInstructions(Instruction, boolean, TapList, String) (Java method) setIndepsPathNames(TapList) (Java method) setIndepsPathZones(TapList) (Java method) setIndepsZones(TapIntList) (Java method) setInfiniteEndOffset(boolean) (Java method) setInfoBoolMatrixAtRowsColumns(BoolMatrix, TapList, int, TapList, int) (Java method) setInfoBoolTreeToExtendedDeclaredZones(BoolVector, int[], TapList, boolean, TapList, boolean, int) (Java method) setInfoBoolTreeToExtendedDeclaredZones(BoolVector, int[], TapList, TapList, TapList, boolean, int) (Java method) setInfoPRZVTreeToExtendedDeclaredZones(BoolMatrix, int[], TapList, TapList, TapList, boolean, int) (Java method) setInIncludeFile(Tree) (Java method) setInitConstructorBlock(InitConstructorBlock) (Java method) setInitializationTree(Tree) (Java method), [1] setInitializedLocalZones(TapIntList) (Java method) setInitTree(Tree) (Java method) setInlinedUnits(TapList) (Java method) setInOutAnalyzer(InOutAnalyzer) (Java method) setInputLanguage(int) (Java method) setInputStream(TreeProtocol) (Java method) setInStdCIncludeFile() (Java method) setInstruction(Instruction) (Java method), [1] setInstruction(SymbolDecl) (Java method) setInstructionBoolInfo(BlockStorage, Instruction, boolean) (Java method) setInterface() (Java method) setInterfaceDeclaration(Instruction) (Java method) setInterfaceInstr(boolean) (Java method) setInterfaceUnits(TapList) (Java method), [1], [2] setIntrinsic() (Java method) setIntrinsicDefaultInOutInfo(Unit) (Java method) setIsDiffPackage(boolean) (Java method) setIsServlet() (Java method) setIsTranslationUnit() (Java method) setJustAnIndex(boolean) (Java method) setKind(int) (Java method), [1] setKind(Unit) (Java method) setLabelVariablesEffect(Block[]) (Java method) setLanguage(int) (Java method), [1] setLanguageAndUp(int) (Java method) setLanguages(int, int) (Java method) setLengthTree(Tree) (Java method) setLineCommentChar(char) (Java method) setLocalTBR(BoolVector) (Java method) setLocalTBROnDiffPtr(BoolVector) (Java method) setLostComments(TapList) (Java method) setMainDeclInstr(boolean) (Java method) setMainUnit(Unit) (Java method) setMixedLanguageInfos(TapList) (Java method) setModeAdjoint() (Java method) setModeNoDiff() (Java method) setModeOverloading() (Java method) setModeTangent() (Java method) setModule() (Java method) setMsgLevel(int) (Java method)

setMultiple() (Java method) setMultiple(TapList) (Java method) setMustAdjoint(boolean) (Java method) setMustContext(boolean) (Java method) setMustTangent(boolean) (Java method) setName(String) (Java method) setNewTypeDecl(TypeDecl) (Java method) setNoneInstruction() (Java method) setNullInstruction() (Java method) setNullInstructionIfNone() (Java method) setObj(T) (Java method) setOmpClauseAnalyzer(OmpClauseAnalyzer) (Java method) setOnceActive() (Java method) setOnceActiveZones(BoolVector, SymbolTable, int, int) (Java method) setOperator(Operator) (Java method) setOrAddTypeDeclName(String) (Java method) setOrCumulRequiredDiffVars(ActivityPattern, BoolVector) (Java method) setOrigCallGraph(CallGraph) (Java method) setOrigCycleLabel(String) (Java method) setOrigLabel(String) (Java method) setOrigTree(Tree, Tree) (Java method) setOtherDefSymbolTable(SymbolTable) (Java method) setOtherName(Unit) (Java method) setOtherReturnVar(VariableDecl) (Java method) setOutputLanguage(int) (Java method) setParent(Tree) (Java method) setParserFileSeparator(String) (Java method) setPhaseSubGraph() (Java method), [1] setPhaseUseful(BoolVector, BlockStorage) (Java method) setPhaseVaried(BoolVector, BlockStorage) (Java method) setPointerAnalyzer(PointerAnalyzer) (Java method) setPointerComments(TapList) (Java method) setPosition(Instruction) (Java method) setPosition(int) (Java method), [1] setPosition(Tree, int) (Java method) setPredefinedModuleOrTranslationUnit() (Java method) setPreviousFunctionDeclAndNewUnit(FunctionDecl, Unit) (Java method) setPrimitiveTypeSize(int) (Java method) setPrivateSymbolTable(SymbolTable) (Java method) setProtectedSymbolTable(SymbolTable) (Java method) setPublicSymbolTable(SymbolTable) (Java method) setRank(int) (Java method), [1], [2] setRecomps(BlockStorage) (Java method) setRecompute(boolean) (Java method) setRefValue(Tree, int, BoolVector, int[], boolean, boolean) (Java method) setRelatedArrow(CallArrow) (Java method) setRelatedLanguage(int) (Java method) setRelatedLanguage(SymbolTable) (Java method) setRelatedUnit(Unit) (Java method) setRemoveDeadControl(boolean) (Java method) setRemoveDeadPrimal(boolean) (Java method) setReqExplicitAnalyzer(ReqExplicit) (Java method) setRequiredInDiff(ActivityPattern, Tree) (Java method) setReqXEffects(BoolMatrix) (Java method) setReqXEffectsAdded(BoolVector) (Java method) setReqXMark(String) (Java method) setReqXs(BlockStorage) (Java method) setReturnTypeSpec(WrapperTypeSpec, Tree) (Java method) setReturnVar() (Java method) setReturnVar(FunctionDecl) (Java method) setRootCallGraph(CallGraph) (Java method) setRow(int, BoolVector) (Java method) setSaveAll() (Java method) setSelected(boolean) (Java method) setShared() (Java method) setShortName(String) (Java method) setSideEffect(int, boolean) (Java method) setSideEffect(TapIntList, int[], boolean) (Java method) setSize(Tree) (Java method) setSourceCodeCorrespondence(Tree, Tree, boolean, boolean) (Java method) setSpareDiffReinitializations(boolean) (Java method) setSplitBackward(ActivityPattern, Unit) (Java method) setSplitForward(ActivityPattern, Unit) (Java method) setSrcCallName(String) (Java method) setStartOffset(int) (Java method) setStartVars(TapList) (Java method) setStaticActivity(BoolVector) (Java method) setSubInt(int, int, int, int) (Java method) setSystemPredefined() (Java method) setTangent(ActivityPattern, Unit) (Java method) setTapenadeHome(String) (Java method) setTargetNameAndZone(String, String) (Java method), [1] setTbrs(BlockStorage) (Java method) setTest(int, int[], boolean) (Java method) setTest(TapIntList, int[], boolean) (Java method) setTimes(int) (Java method) setTopDownContext(Unit, Object) (Java method) setToProtectedExpr(int, Tree, Tree, TypeSpec) (Java method) setTopUnitName(String) (Java method) setTraceActivity(TapList) (Java method) setTraceADDeps(TapList) (Java method) setTraceDeps(TapList) (Java method) setTraceDiffLiveness(TapList) (Java method) setTraceFlowGraphBuild(TapList) (Java method) setTraceIndent(int) (Java method) setTraceInOut(TapList) (Java method) setTraceInputIL(boolean) (Java method) setTraceLevel(int) (Java method) setTraceOn(boolean) (Java method) setTracePointer(TapList) (Java method) setTraceReqExplicit(TapList) (Java method) setTraceTBR(TapList) (Java method) setTraceThisUnit(boolean) (Java method) setTraceTypeCheckAnalysis(boolean) (Java method) setTranslationUnit(String) (Java method) setTranslationUnitSymbolTable(SymbolTable) (Java method) setTree(Tree) (Java method) setTreeRequiredInDiff(ActivityPattern, Tree, boolean) (Java method) setTrue() (Java method) setType(WrapperTypeSpec) (Java method), [1] setTypeDeclName(String) (Java method), [1] setTypeDeclName(String, Unit) (Java method) setTypeDeclNames(TapList) (Java method) setTypeDeclTreeAlreadyPlacedFor(SymbolTable) (Java method) setUndefined() (Java method) setUndefinedNumeric(boolean) (Java method), [1], [2] setUniqueAccessZones(Block) (Java method) setUnit(Unit) (Java method), [1], [2] setUnitDiffArgsByValueNeedOnlyIncrementInfoS(ActivityPattern, boolean[]) (Java method) setUnitDiffArgsByValueNeedOverwriteInfoS(ActivityPattern, boolean[]) (Java method) setUnitFormalArgsActivityS(ActivityPattern, boolean[]) (Java method) setUpperLevelUnit(Unit) (Java method) setUsefulnesses(BlockStorage) (Java method) setUsesRefTo() (Java method) setValid(boolean) (Java method) setValue(int) (Java method), [1] setValue(String) (Java method), [1] setVarDeclTreeAlreadyPlacedFor(SymbolTable) (Java method) setVarDeclTreeNotAlreadyPlaced() (Java method) setVarFunction() (Java method) setVariableNames(TapList) (Java method) setWhereMask(InstructionMask) (Java method) setWrappedType(TypeSpec) (Java method), [1], [2], [3], [4], [5], [6] setZones(TapList) (Java method), [1], [2] shareActiveFields(CompositeTypeSpec) (Java method) shareActiveFields(TypeSpec) (Java method) shareActivity(SymbolDecl) (Java method) shareUnitFrom(FunctionDecl) (Java method) shortName() (Java method), [1] showComparison(int) (Java method) showDialog(Iterable) (Java method) showDimensions() (Java method) showMap(int[]) (Java method) showMessages (Java field) showType() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15] SIDE_EFFECT (Java field) sideEffectMemoryMap (Java field) sideEffectZoneInfo(int, int) (Java method) sideEffectZoneName() (Java method) sideEffectZonesNb(int) (Java method) SIGNED (Java field) size() (Java method), [1] sizeModifier (Java field) sizeModifierIntegerSmaller(int, int) (Java method) sizeModifierResolved (Java field) sizeModifierValue() (Java method) skipEmpty() (Java method) SLASH (Java field) smartCopy(TapList, Object, CallGraph, UnitStorage) (Java method) solve(SymbolTable, boolean) (Java method) solveNewSymbolHolders(boolean) (Java method) solveNewSymbolHoldersOfUnit(Unit, boolean) (Java method) solvingLevelMustInclude(SymbolTable) (Java method) solvingRootIsOutsideFile(SymbolTable) (Java method) someUnitsAreTraced() (Java method) sort(TapIntList) (Java method) sortDeclarationsAndOperations() (Java method) sortedComputationalUnits() (Java method) sortedContains(TapIntList, TapIntList) (Java method) sortedIntersects(TapIntList, TapIntList) (Java method) sortedUnit(int) (Java method) sortedUnits() (Java method) sortFlowArrows() (Java method) sortOfDiffUnit (Java field) sortRk (Java field) sortUnits(boolean, int, int, int) (Java method) space() (Java method) space(int) (Java method), [1], [2], [3] spareDiffReinitializations (Java field) spareDiffReinitializations() (Java method) spareNoDiffArgs (Java field) SPECIALIZEACTIVITY (Java field) speedX (Java field) speedY (Java field) split(TapList, TapIntList) (Java method) splitDeclInit(Tree, boolean, Unit) (Java method) splitDiffExpressions (Java field) SplitForSave (Java class) SplitForSave(SymbolTable, TapIntList, TapList, TapList, BoolVector, int[], BlockDifferentiator) (Java constructor) splitInstructions() (Java method) splitLongDeclaration(Tree) (Java method) srcCallGraph() (Java method) srcCallName() (Java method) srcInstruction (Java field) srcUnitsToTraceInTreeGen (Java field) standaloneDiff (Java field) start() (Java method) startAnchorRef(String) (Java method), [1] startOffset (Java field), [1] startVars() (Java method) statementFunctions (Java field) staticActivity() (Java method) staticIterationLength() (Java method) staticNormalizedIndex() (Java method) staticTape (Java field) staticValue(Tree) (Java method) STD_CPP_COMMAND (Java field) stdLibraryDirectory (Java field) stopInclude(Tree, String) (Java method) storage (Java field) store(Block, T) (Java method) store(Unit, T) (Java method) str3(int) (Java method) stringContainedIn(String, String[]) (Java method) stringValue() (Java method), [1], [2] stripDiffTypes (Java field) stripLanguageExtension(String) (Java method) stripPath(String) (Java method) stripPrimalCode (Java field) stripPrimalEvenIfImportsActive (Java field) stripPrimalModules (Java field) stripSpecialization(String) (Java method) StructConstants (Java class) structuredTree (Java field) subAccess (Java field), [1] subClassOf(Unit) (Java method) subOrder (Java field) subTree(Tree, Tree) (Java method) subTreeOfPointedZones(BoolVector, int[], WrapperTypeSpec, Tree) (Java method) successor (Java field) suffixes (Java field) suffixF90 (Java field) sval (Java field) switchOnCombineDeclMessages(boolean) (Java method) SwitchStruct (Java class) SwitchStruct(Block) (Java constructor) SYMBOL (Java field) symbol (Java field) SymbolDecl (Java class) symbolDecl (Java field) SymbolDecl() (Java constructor) SymbolDecl(String, int) (Java constructor) SymbolDecl(Tree, int) (Java constructor) symbolDeclDeclared(Instruction) (Java method) symbolDeclDeclared(Tree, SymbolTable) (Java method) symbolDeclOf(Tree) (Java method) symbolicRk (Java field) SymbolTable (Java class) symbolTable (Java field), [1] SymbolTable(SymbolTable) (Java constructor) SymbolTableConstants (Java class) symbolTablesBottomUp() (Java method) syntaxController (Java field) syntaxControls(Instruction) (Java method) systemError(String) (Java method) systemPredefinedZones() (Java method) systemWarning(int, String) (Java method)

T

tagMessagePassingSymbolHolder (Java field) tags (Java field) tail (Java field), [1] TANGENT (Java field) TANGENT_MODE (Java field), [1] tangentDifferentiateAssignedExpression(Tree, Tree, TapList, Tree, BoolVector, TapPair, TapPair, SymbolTable) (Java method) tangentDifferentiatePlainExpression(ToObject, TapList, BoolVector, TapPair, TapPair, SymbolTable) (Java method) tangentDiffExpr(ToObject, BoolVector, TapPair, TapPair) (Java method) Tapenade (Java class) Tapenade(int, String, int, String, String, String, String[], String, String, String, String, boolean) (Java constructor) TAPENADE_GEN_HTML_DIR (Java field) TAPENADE_SERVLET_OUTPUT_DIR (Java field) tapenadeCss (Java field) tapenadeExit(int) (Java method) TapenadeFrame (Java class) tapenadeHome() (Java method) tapenadeUtilityFunctionName(Unit, String) (Java method) TapEnv (Java class) TapEnvForThread (Java class) TapEnvForThread() (Java constructor) TapFileFilter (Java class) TapIntList (Java class) TapIntList(int, TapIntList) (Java constructor) TapList (Java class) TapList() (Java constructor) TapList(T, TapList) (Java constructor) TapPair (Java class) TapPair(F, S) (Java constructor) TapTriplet (Java class) TapTriplet(F, S, T) (Java constructor) TapWindow (Java class) TapWindow() (Java constructor) TARGET (Java field) targetZoneOf (Java field) targetZonesTree (Java field) tbrs() (Java method) TemporaryBlock (Java class) TemporaryBlock(Block) (Java constructor) terminateCGForUnit() (Java method), [1], [2], [3], [4], [5] terminateFGForBlock() (Java method), [1], [2], [3], [4], [5] terminateFunctionDeclarationInstructions(Tree) (Java method) terminateTermBlock() (Java method), [1], [2], [3] terminateTypesAndZones() (Java method) terminateUnit() (Java method), [1], [2], [3], [4], [5], [6], [7] test (Java field) testAcceptsUnspecified(int) (Java method) testAllowsVectorial(int) (Java method) testAndCasesToString(int, TapIntList) (Java method) testComparesWith(TypeSpec, int, TypeSpec, TypeSpec, TapList) (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14] testConformingAndChoose(ArrayDim, ArrayDim) (Java method) testHasInference(int) (Java method) testIsEquals(int) (Java method) testIsReceives(int) (Java method) testIsReceivesWithInference(int) (Java method) testLooksDimensionLength(int) (Java method) testSetEquals(int) (Java method) testTypesCompilDep(int) (Java method) testTypesLitteral(int) (Java method) testTypesWithoutSize(int) (Java method) testUnsetInference(int) (Java method) testZone (Java field) testZonesNb() (Java method) text (Java field) textMessageFileName (Java field) TextPrinter (Java class) TextPrinter(OutputStream) (Java constructor) TextPrinter(String) (Java constructor) TGT_DEBUG (Java field) third (Java field) times() (Java method) times(BoolMatrix) (Java method) times(BoolVector) (Java method) TIMES_LOOP (Java field) timesTransposed(BoolMatrix) (Java method) to (Java field) toActiveTmpZones (Java field) toAllBlocks (Java field) ToBool (Java class) ToBool() (Java constructor) ToBool(boolean) (Java constructor) toBranchVariable (Java field), [1] toChunklengthVariable (Java field) toChunkoldVariable (Java field) toDiffchunkoldVariable (Java field) toFile() (Java method) toFwdChunklengthVariable (Java field) toIndexSymbolHolders (Java field) ToInt (Java class) ToInt(int) (Java constructor) TOKEN (Java field) toLast(TapList) (Java method) ToObject (Java class) ToObject(T) (Java constructor) toolError(String) (Java method) toolWarning(int, String) (Java method) TOP_LEVEL (Java field) topBlock (Java field) topBlocks() (Java method) topDownContext(Unit) (Java method) topDownContexts (Java field) TopDownTreeWalk (Java class) TopDownTreeWalk(Tree) (Java constructor) topoSort() (Java method) topPostComments (Java field) topPostCommentsBlock (Java field) topPreComments (Java field) topPreCommentsBlock (Java field) topUniqueAccessZones (Java field) TopUnitPanel (Java class) TopUnitPanel() (Java constructor) topUnits() (Java method) toSharingTypes (Java field) toString() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25], [26], [27], [28], [29], [30], [31], [32], [33], [34], [35], [36], [37], [38], [39], [40], [41], [42], [43], [44], [45], [46], [47], [48], [49], [50], [51], [52], [53], [54], [55], [56], [57], [58], [59], [60], [61], [62], [63], [64], [65], [66], [67], [68], [69], [70], [71], [72], [73], [74], [75], [76], [77], [78], [79], [80], [81], [82], [83], [84], [85], [86], [87], [88] toString(int) (Java method) toString(int[]) (Java method)

toString(Object) (Java method) toString(Tree) (Java method) toString(Tree, ActivityPattern) (Java method) toString(Tree, int) (Java method) toString(Tree, int, ActivityPattern) (Java method) toString(Tree, int, boolean) (Java method) totalArrayLength(TapList) (Java method) toTotalZones (Java field) TRACE_ALWAYS (Java field) TRACE_ANALYSIS (Java field) TRACE_BUILD (Java field) TRACE_DEBUG (Java field) TRACE_DEFAULT (Java field) TRACE_DUMP (Java field) TRACE_INFO (Java field) traceActivity (Java field) traceActivity() (Java method) traceADDeps (Java field) traceADDeps() (Java method) traceBlockRk (Java field) traceCallArrowDestinationName (Java field) traceCallArrowOriginName (Java field) traceCurAnalysis (Java field) traceCurBlock (Java field) traceCurDifferentiation (Java field) traceDeps (Java field) traceDeps() (Java method) traceDifferentiationUnitNames (Java field) traceDifferentiationUnits (Java field) traceDiffLiveness (Java field) traceDiffLiveness() (Java method) traceDisplayPrivateZones(Unit, int[], int) (Java method) tracedTypeCheckUnits (Java field) tracedUnits (Java field) traceFlowGraphBuild (Java field) traceFlowGraphBuild() (Java method) traceIndent (Java field) traceIndent() (Java method) traceInOut (Java field) traceInOut() (Java method) traceInputIL (Java field) traceInputIL() (Java method) traceOutputStream (Java field) traceParser (Java field) tracePointer (Java field) tracePointer() (Java method) traceReqExplicit (Java field) traceReqExplicit() (Java method) traceTBR (Java field) traceTBR() (Java method) traceThisCallArrow(CallArrow) (Java method) traceTreeGenUnitNames (Java field) traceTypeCheck (Java field) traceTypeCheckAnalysis (Java field) traceTypeCheckAnalysis() (Java method) transferMatrix(int) (Java method) transferTransposed(BoolMatrix, int) (Java method) transformFor2Do(Tree) (Java method) translateDeclaredToPublicZones(TapIntList) (Java method) translateToCallerZones(TapIntList, Unit) (Java method) translationUnitSymbolTable() (Java method) translator (Java field), [1] translator() (Java method) Tree (Java class) tree (Java field), [1], [2], [3] tree() (Java method), [1] Tree(Operator) (Java constructor) TreeGen (Java class) treeOfZonesOfValue(Tree, ToBool, Instruction, BoolMatrix) (Java method) TreeProtocol (Java class) TreeProtocol(BufferedReader) (Java constructor) TreeProtocol(InputStream) (Java constructor) TreeProtocol(LibReader) (Java constructor) treesReverse (Java field) TRUE (Java field) trueForAll(TapList) (Java method) trueIndexList(int) (Java method) tryFlushComments(int, boolean) (Java method), [1], [2] tryFlushCommentsBlock(int, boolean) (Java method), [1] tryStaticTape(Block, int, String, WrapperTypeSpec, SymbolTable, SymbolTable) (Java method) turnAssignFromInitDecl(Tree) (Java method) turnAssociationByAddressPrimal(Tree, SymbolTable, SymbolTable, WrapperTypeSpec) (Java method) turnCarryIntoJump(FGArrow) (Java method) turnExternal() (Java method) turnIntrinsic() (Java method) turnNomatchIntoDefault() (Java method) turnReturnIntoAssign(Tree, String) (Java method) turnTypeIntoPointer() (Java method), [1] TYPE (Java field), [1], [2] type (Java field), [1] type() (Java method), [1], [2], [3], [4] typeCheck() (Java method) typeCheck(SymbolTable) (Java method) typeCheck(Tree, boolean, boolean, boolean, Instruction, ToBool, Unit) (Java method) typeCheckInterface() (Java method) typeCheckNameEqOptionalArguments(SymbolTable, Tree[], WrapperTypeSpec[], WrapperTypeSpec[], int, Tree, Tree, ToBool) (Java method) typeCheckOptionalArguments(WrapperTypeSpec[], Tree, Tree, ToBool) (Java method) TypeDecl (Java class) typeDecl() (Java method) TypeDecl(String, WrapperTypeSpec) (Java constructor) TypeDecl(Tree, WrapperTypeSpec) (Java constructor) TypeDecl(Tree, WrapperTypeSpec, Unit) (Java constructor) typeDeclName() (Java method) typeDeclNames() (Java method) TypeDeclStruct (Java class) TypeDeclStruct(TypeDecl) (Java constructor) typeName(Tree) (Java method) typeOf(Tree) (Java method) typeSign (Java field) typeSizeModifier (Java field) typesOf(Tree) (Java method) TypeSpec (Java class) typeSpec (Java field) typeSpec() (Java method) TypeSpec(int) (Java constructor)

U

UNDEFINED (Java field) UNDEFINED_FORMAL_ARG_RANK (Java field) undefinedLabels(Block, SymbolTable) (Java method) UNDEFINEDSIZE (Java field) UNDEFSORT (Java field) union(TapIntList, TapIntList) (Java method) union(TapList, TapList) (Java method) unionString(TapList, TapList) (Java method) UNIONTYPE (Java field) unique(TapList) (Java method) uniqueAccessTrees (Java field) uniqueAccessZones (Java field), [1] Unit (Java class) unit (Java field), [1], [2], [3] unit() (Java method), [1], [2], [3], [4] Unit(CallGraph, int, Unit, int) (Java constructor) unitActivities (Java field) unitADDependencies (Java field) unitAvlXs (Java field) UnitCreationContext (Java class) UnitCreationContext(Unit, TapList, TapList) (Java constructor) unitDependencies (Java field) UnitDiffInfo (Java class) UnitDiffInfo(Unit, DifferentiationEnv) (Java constructor) unitDiffTimer (Java field) unitInOutCertainlyR() (Java method) unitInOutCertainlyW() (Java method) unitInOutN (Java field) unitInOutN() (Java method) unitInOutPossiblyR() (Java method) unitInOutPossiblyRorW() (Java method) unitInOutPossiblyW() (Java method) unitInOutR (Java field) unitInOutR() (Java method) unitInOutRW (Java field) unitInOutRW() (Java method) unitInOutW (Java field) unitInOutW() (Java method) unitIsContext(ActivityPattern) (Java method) UnitNode (Java class) UnitNode(Unit) (Java constructor) unitPathName() (Java method) unitRecomputations (Java field) unitReqXs (Java field)

units() (Java method), [1] unitsHaveDiff (Java field) unitsHavePrimal (Java field) UnitStorage (Java class) UnitStorage(CallGraph) (Java constructor) UnitStruct (Java class) UnitStruct(Unit, boolean) (Java constructor) unitTBRs (Java field) unitUsefulnesses (Java field) UNKNOWNTYPE (Java field) UNSIGNED (Java field) UNSPECIFIED_SIGNED (Java field) UNUSED (Java field) unusedZones (Java field) update(Graphics) (Java method) updateAACopiedInstruction(Instruction, Block, Block, int) (Java method) updateAAInstructionMask(Instruction, SymbolTable, SymbolTable) (Java method) updateAfterImports(SymbolTable, TapList) (Java method), [1], [2] updateAllUsagesDiffFuncResultName(Unit, String, Unit, Tree) (Java method) updateImportedDim(SymbolTable) (Java method) updateImportedZones() (Java method) updateModulesAndCopiedUnitsInCopiedInterface(Tree, SymbolTable, int) (Java method) updateNestsOfBlocks(Block, TapList) (Java method) updateTapEnvInclude(Tree) (Java method) updateUnitDefinitionStub(Unit) (Java method) upper (Java field) upperLevelUnit() (Java method) upperTree() (Java method) USE (Java field) USED_UNDEF (Java field) usedAsElementalResult (Java field) usedLabels (Java field) usedModule (Java field) usedNames (Java field) usedUnits(Tree, TapList, SymbolTable) (Java method) usedVarsInExp(Tree, TapList, boolean) (Java method) usedVarsInTreeOfExps(TapList, TapList, boolean) (Java method) usefulName (Java field) usefulnesses() (Java method) usefulOnExit() (Java method) userHelp (Java field) usesADMM (Java field) usesISO_C_BINDING (Java field) usesRefTo() (Java method) usesStaticSave() (Java method)

V

valid (Java field) valid() (Java method) VAR (Java field) varFunctionADActivities() (Java method) varHasModifier(Tree, String) (Java method) VARIABLE (Java field), [1] variableArgList (Java field) VariableDecl (Java class) VariableDecl() (Java constructor) VariableDecl(Tree, WrapperTypeSpec) (Java constructor) VariableDecl(Tree, WrapperTypeSpec, boolean) (Java constructor) variableDeclaratorToVariableRef(Tree) (Java method) VariableDeclStruct (Java class) VariableDeclStruct(VariableDecl, Tree) (Java constructor) variableNames() (Java method) VariablesChooser (Java class) VariablesChooser(JFrame) (Java constructor)

VariablesPanel (Java class) VariablesPanel(int) (Java constructor) variedOnCall() (Java method) varIsIntentIn(Tree) (Java method) VarRefDifferentiator (Java class) varRefDifferentiator (Java field) VarRefDifferentiator(DifferentiationEnv) (Java constructor) vectorIndexToExtendedDeclared(int, int, int, int[]) (Java method) vectorIndexToExtendedDeclared(int, int, int, int[], SymbolTable) (Java method) vectorIndexToZoneInfo(int, int, int, int[]) (Java method) vectorIndexToZoneInfo(int, int, int, int[], SymbolTable) (Java method) view(Object) (Java method), [1] virtualChildren (Java field) visit (Java field) VOIDTYPE (Java field) VoidTypeSpec (Java class) VoidTypeSpec() (Java constructor)

W

w2 (Java field) waitingComments (Java field) waitingCommentsBlock (Java field) walkUpToPatternOf(ActivityPattern, Unit, TapList, TapList) (Java method) warningFortran77WithFortran90Features(Unit) (Java method) wasDeleted() (Java method) weakenForInference() (Java method) weakenForInference(int) (Java method), [1], [2], [3], [4], [5] whereMask (Java field) whereMask() (Java method)

whereMaskDepth() (Java method) WHILE_LOOP (Java field) WILD_LOOP (Java field) wrappedType (Java field) wrappedType() (Java method), [1], [2], [3], [4], [5], [6] WRAPPERTYPE (Java field) WrapperTypeSpec (Java class) WrapperTypeSpec(TypeSpec) (Java constructor) WRITE (Java field), [1] writeToILFile(BufferedWriter) (Java method) writeToILFile(java.io.BufferedWriter) (Java method), [1], [2], [3], [4]

X

x (Java field)

x3 (Java field) xor(BoolVector) (Java method)

Y

y (Java field)

y3 (Java field)

Z

zone (Java field), [1] ZoneAllocator (Java class) ZoneAllocator(SymbolTable) (Java constructor) ZoneInfo (Java class) zoneInfo (Java field) ZoneInfo(int, int, boolean) (Java constructor) zoneInfos (Java field) zoneInfoToExtendedDeclared(ZoneInfo, int) (Java method) zoneInfoToExtendedDeclared(ZoneInfo, int, SymbolTable, Unit) (Java method) zoneInfoToVectorIndex(ZoneInfo, int, int, int[]) (Java method) zoneInfoToVectorIndex(ZoneInfo, int, int, int[], Unit) (Java method) zoneIsPointer(int) (Java method) zoneIsPointer(int, SymbolTable, Unit) (Java method) zoneIsScalar(int) (Java method) zoneNb (Java field) zoneNbOfAllIOStreams (Java field)

zoneRkToExtendedDeclared(int, int, int) (Java method) zoneRkToExtendedDeclared(int, int, int, SymbolTable, Unit) (Java method) zoneRkToPublicRk(int, int, Unit) (Java method) zoneRkToVectorIndex(int, int, int, int[]) (Java method) zoneRkToVectorIndex(int, int, int, int[], Unit) (Java method) zoneRkToZoneInfo(int, int, int) (Java method) zoneRkToZoneInfo(int, int, int, SymbolTable, Unit) (Java method) zones (Java field) zones() (Java method), [1], [2] zonesMPIiReceived() (Java method) zonesMPIiReceivedLength() (Java method) zonesNb(int) (Java method) zonesOfDestination(TapList, WrapperTypeSpec, Instruction, BoolMatrix) (Java method) zonesOfVarsHaveDiff() (Java method) zonesUsedByExp(Tree, Instruction) (Java method) zonesUsedInDeclarations (Java field)